Semicossyphus pulcher (California sheephead): 138603152
Help
Entry
138603152 CDS
T10596
Symbol
tnrc6c1
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
spul Semicossyphus pulcher (California sheephead)
Brite
Messenger RNA biogenesis [BR:
spul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138603152 (tnrc6c1)
Chromosome and associated proteins [BR:
spul03036
]
Eukaryotic type
Gene silencing
piRNA pathway
138603152 (tnrc6c1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
UBA
RRM_1
RRM_occluded
UBA_NBR1_C
THOC7
Motif
Other DBs
NCBI-GeneID:
138603152
NCBI-ProteinID:
XP_069530944
LinkDB
All DBs
Position
Unknown
AA seq
1839 aa
AA seq
DB search
MEDKKKKKQDEKKKKEAAQKKATEQITKVPDSAKLDPAPPLPPVNPSAAPSVPPSSGNGK
RAPSGGQPQTAQQPQTPLQQRYPPREVPPRFRQQEHKQLLKRGQPLPPGTLPLTNTGHPT
TTEPAAAVAIHSSPSCSSSSTASLPTELPPQSGQGAQYDNPLWGHLPANRSATSAAPSTN
HSGWDQLIIDQKDTEAWPSITLSQSQAPPGGCPLDTDPGRLTSSSSSSSSSTSSSCSTVI
MATGANSQTGHFPANQLSSKANSGPSPANHTGTSMLSSQVAANRSWGSGPGPSHCPPQSS
VGSEGKNDSPAGGGGGSRGWGSSSSSTNNFNLNLNPNANPSAWPMLGHDGGGTGGGSSGG
ANTISTPQPTPNLCNQPGPPPAQTSTCTGANTNSNSSVIGSAWGSMMASDSSEPHPSPST
NVSFSSEPQNLKTDGPNHTNKQEPPSPIRNLPSWGSAPVGLGSMGQPPSGGPQVNGEDGS
SVWGNSGDSKAPSSKEASGWDSGWGHGGSGAGNSGGWGEQSGRGWGKQHTEETQGGWDAP
SSPPQDPQASPWGRAVSTAGASEGSSDSMEGNPQQRDRSARDNPAPLIPAQDLDPRVLCN
TGWGQTPVRQHTSWDMEESKRKSEGSESWSSGPSTPSDAQGPSNTNMGPPQRADPGIKND
VPGSQGASGWGGSIAATNQPSSGWGEQPNNIKPQSGPGGWGNPPSTGPPTSIPKNGGQSW
GEEKSSGWEDSHIKTSSSQGWGEQSKASHSWGNSGGSNNSGDWREPEESKKSPNNPGWEG
DAGGLKENPRGWAMPSSGPGISGAGGNGSWGEPVCQRPSGPPQGWTGKPQDGPSGSSGGG
SMGSWGGSGSVKQGAGWVGSKQESSAEPTGWEEPSPPSIRRKMEIDDGTSAWGDPGTYSK
SVNLWDRNNPGLSQAKVTSGGNNPPGPNNNHPPPHNHTYHGPPAPLQNHTPNSQNPGPTS
GPMDSVVQHQSGPSHNRAPLIAQGWGEISSSHTKSESSWGEPAPPPVSVDNGTSAWGKAT
GSCGGWGDNNPDSYGRGNPTMTPASCKPAPKPMQDGWGGGGEELNLSGGQWDAEEGDMWN
NTASQESNSSCNSWGNASKKAPQKVIKVPVKQEDAWIMNRLIKQLTDMGFPRDPAEEALK
SNNMNLDQAMSALLEKKTELDKRGMGITGHDYNNGLINKPMSCPRPPLLSKDPSADPRLP
FMDKMQSGMFGGGGAAQARAMQQPQPPPQPPVPPLSSSQPSLRAQVPQFLSPQVQAQLLQ
FAAKNIGLNPALLTSPINPQHMTLLNQLYQLQLAYQRLQIQQQMLQAQRNVSGPIRQQEQ
QVARTINNMQQQIQQHQRQLAQALLMKQQQQQPPPSHSGLHPGGAKSSLDSFPGHPQAPG
LPDLQTKEPQSSPNTYSPYSLSGLNQNMNVNCMDVGGLSMKEPPQPQSRLSQWTHPNSIE
SLSGSSSPLEPNLGKHGANLGPPGKPHQLEDSYSPYNLMSSSESPTSPLVPPDSWGQGKS
SSDKMANGTNINWPPEFCPGVPWKGLQNIDPENDPNMTPGSVPSGPTINTNIQDVNRYLL
RDRSGGKLSEMKSTWSPGPISHSQAPLSHELWKVPQGPRGSNAAPSRPPPGLTNTKPSTW
GGNSLGLAQGWSSSYTTAGTTWSTDSSTRTSSWLVLRNLTPQIDGSTLRTLCMQHGPLIT
FHLNLTQGNAVVRYSSKDEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFFAQGQLLGGT
TSWQATPGTNQTRMGGAGSGAAHPIGHSPHWNNNNGSSSSSSSGLGTGGAKTGGELLWGG
VPQYSSLWGPPSGEEGRVVGSPTPINTLLPGDLLSGESM
NT seq
5520 nt
NT seq
+upstream
nt +downstream
nt
atggaagataagaaaaagaaaaagcaagacgagaagaaaaagaaagaagctgctcagaaa
aaggccacagaacagataaccaaagtgccagactctgccaagctcgaccccgcccctcct
cttccccccgtgaaccccagtgccgccccgtctgtacccccaagcagtggcaatggcaag
cgtgccccctccggaggtcagccgcagacagcacagcagccccagactccgctccagcag
cgctacccgcccagagaggtgcccccacgcttccgccagcaggagcacaagcagctgttg
aagaggggccagcctcttcccccggggaccctgcctctcaccaacacgggacatcccacc
actactgaaccggcagcagcagtagccatacactcctctccctcctgctcctcttcctcc
acagccagcctgcctacagaattgcccccacagagcggccagggagcccagtatgataat
cccctttggggacacctgccagccaacaggagtgccacaagtgctgcaccttccaccaat
catagtggctgggatcaactgatcattgaccagaaggacacagaggcttggccttctatt
accctcagccaaagccaggcccctccaggaggatgccctttggacactgaccctggtcgc
ctgaccagcagcagcagcagcagcagcagtagtactagtagtagttgtagtacagtgatt
atggccacaggggctaatagccagacaggccacttccctgccaaccaacttagcagcaag
gccaacagtgggcccagccctgccaatcatactggaaccagcatgctctctagccaggtt
gcagccaatcgcagctggggatctgggcctggaccctcccattgcccccctcagtcctca
gtggggagtgaagggaagaacgacagcccagcagggggaggaggaggcagcaggggctgg
ggctcttcgtcatcttccaccaacaactttaacttgaacctaaaccctaatgccaaccct
tcagcctggcccatgctggggcatgatgggggtggcacagggggaggcagctcaggggga
gccaacaccatttcaactcctcaacctacacccaacctctgtaatcaacctggcccccca
ccagcccagaccagcacctgtactggagccaacactaacagcaactcctctgtgattggc
agcgcctggggtagcatgatggcttctgactcgtcagagccacacccctccccgtccaca
aatgtgtctttcagttcagaacctcagaaccttaaaactgatggaccaaatcacactaat
aaacaggaaccccccagccccatccgcaacttgcctagctggggtagtgcacctgtaggc
ttgggttccatgggccagcccccatcagggggcccacaggtcaatggagaagatggtagc
tcagtatggggcaacagtggagactcaaaggcaccttcatctaaggaggcttctggctgg
gactctggctggggccatggaggaagtggagcaggaaactctggaggctggggtgagcag
tctggtagaggctgggggaagcagcacactgaagagacacagggaggctgggatgccccc
agctctcctccccaggatccacaggctagtccctggggcagagctgtgagcacagctggt
gcgagtgaaggaagcagtgacagcatggaaggaaatccccagcaaagagatcgctcagcc
agagataatccagcacctctgatacctgctcaggatctggaccccagggttttgtgtaac
actggctggggacagacccctgttcgtcagcatacctcctgggacatggaggaaagtaaa
cgcaagagtgaaggctctgaatcatggagctctggcccaagcactccaagtgacgctcaa
ggaccctccaacactaacatgggccccccacagagggctgaccctggaatcaaaaatgat
gtgcctggttctcagggagcttcaggttggggtggaagcatagctgctaccaaccaaccc
agctctggttggggagagcaaccaaacaacattaagccccaaagtggccccggtggctgg
gggaaccctccatcaactggcccccccaccagtatacccaagaatgggggtcagtcctgg
ggagaagagaagtcttctgggtgggaggattctcacatcaagacatcatcatcccaaggt
tggggagagcaatccaaagcatctcacagctggggcaatagtggagggagcaataattca
ggggactggagagaaccagaagagagcaaaaagagtcccaacaaccctggttgggaaggg
gatgcaggaggcttgaaggaaaaccccaggggttgggcaatgccttcttccggacctggg
atatctggagctggaggaaacgggagctggggcgagccagtgtgccaacgacccagtggt
cctccccaaggttggactggcaagcctcaggatgggcccagtggaagtagtggaggaggg
agcatgggctcttggggtggttccggctcagtgaagcagggtgcaggctgggttggtagt
aagcaggaatcctcagctgagcccacaggctgggaggagccctccccaccttcaatccga
cgtaagatggagatagatgatgggacctcagcttggggtgaccctggaacctacagcaag
tcagtcaacctgtgggacaggaacaatccaggattgtcccaggccaaagtcacctctgga
ggcaataaccccccaggccccaacaacaaccatccacctcctcacaatcacacctatcat
gggccacctgcacctttacagaatcacaccccaaactcccaaaacccagggcccaccagt
ggacccatggattctgttgtccaacaccagtctgggccatctcacaaccgggctcccctg
atagctcaaggttggggagagatttccagctcccacacaaaatcagagagctcttggggg
gaacctgcaccccctcccgtcagtgtggacaacgggacgtctgcctggggcaaagctacc
ggcagctgtggaggctggggagacaataacccggacagctacggcaggggcaacccgacg
atgacacctgcatcttgcaaacctgcccccaaacctatgcaagatggatggggaggtgga
ggtgaagagctgaacttgtcagggggtcagtgggatgctgaggagggagacatgtggaac
aacactgcctcccaggaaagcaactcctcctgcaactcttggggcaatgcatcgaaaaaa
gccccacagaaggtaataaaagtcccagtgaagcaggaggatgcctggatcatgaatcgt
ctcatcaaacagctgacagatatgggcttccctagggacccagcagaggaggctctgaag
agcaacaacatgaacctggaccaggccatgagtgccctgctggagaagaagacggagcta
gacaagcgggggatggggataaccggccacgactacaacaacgggctcatcaacaagccc
atgagctgccctcggcctccgcttctttccaaagacccctcggcagacccccgcttgccc
ttcatggataagatgcagagtggaatgtttggcggtggtggagcagcacaagcccgggcc
atgcagcagcctcagccgcctcctcagccgccagtgccgcctctcagttcctctcagcct
agtctacgtgctcaagtgcctcagtttctctcccctcaggttcaagcacagctcttacag
tttgcagcaaaaaacattggtctgaatcctgcacttttaacctcaccaataaaccctcaa
catatgacccttctgaatcaactttaccagctgcaactggcataccagcgtttacaaatt
cagcagcagatgttgcaggcgcaacgcaatgtttctggccccattcgacaacaagagcag
caagttgcacgtacaatcaataacatgcagcagcagatccaacagcaccagcgtcagctg
gcccaggccctgctgatgaagcagcagcaacagcagccgcccccctcccactcgggcctg
catcctggtggggctaaatccagcctggattcatttccaggtcacccccaggctccaggc
ctccctgacctgcagaccaaagagccgcagtcatctcccaacacctacagcccctactct
ctctctggactgaatcaaaacatgaatgtaaactgcatggatgtgggaggtctgtctatg
aaggaacccccccagcctcaatcgcgcctgtcgcagtggacgcatccaaactccatcgaa
agcctctctggaagctcctcccctctagagcccaacctgggcaaacatggtgccaacctg
ggcccccctggcaagcctcatcagctggaggactcttacagcccctacaacctgatgtcc
agctctgagtctcctaccagccccctcgtccccccagacagctgggggcagggcaagagc
agcagtgacaagatggccaatgggaccaatatcaactggccaccagagttctgccccggt
gtgccctggaagggcctccagaatatcgaccctgagaatgaccccaacatgacacccggc
agtgtccccagcgggcccaccatcaacaccaacatccaagatgtcaaccgctacctgctg
cgggacaggagtggaggtaaactgtctgagatgaaatctacgtggtctccgggccccatt
tctcacagccaggcccctctgtcccacgagctgtggaaggtcccccagggcccccggggc
agcaacgcagccccgtcccgccccccgcctggtctcaccaacaccaagccttcgacctgg
gggggcaactccctgggcctggctcaaggctggagcagctcttacaccacagcaggcacc
acgtggagtacagacagctccaccaggaccagcagctggctggttctgaggaacctcacg
ccacagattgacggttcgactctgcgtacactgtgcatgcagcacggccccctcatcaca
ttccacctcaacctgacgcagggcaacgctgtggtgcgctacagctccaaggacgaagct
gccaaggctcagaagtccctgcacatgtgtgtgctcgggaacaccaccatcctggcggag
tttgccggggaagaggaggtgaaccgcttctttgcacagggccagttgctgggaggaacc
accagctggcaggccacaccaggcaccaatcagacgaggatgggcggggccggctctgga
gccgcccatcccatcggtcactcgccccactggaacaacaacaacggcagcagcagcagc
agtagcagtggcctgggaacaggcggagcaaagacaggcggagagttgctgtggggtggc
gtgccgcagtactccagcctgtggggacccccgagcggagaggaggggcgagtcgtgggg
agtcccaccccaatcaacacgctgctgcctggggacctgcttagtggagagtccatgtag
DBGET
integrated database retrieval system
