Semicossyphus pulcher (California sheephead): 138604836
Help
Entry
138604836 CDS
T10596
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
138604836
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Cyt_c_ox_IV
Motif
Other DBs
NCBI-GeneID:
138604836
NCBI-ProteinID:
XP_069532947
LinkDB
All DBs
Position
Unknown
AA seq
1660 aa
AA seq
DB search
MDNLTTAQTLSSGGVAGGSSKGDNIAGGSGGRAALGGSGGTSSSVLITSSSSHATSSGGS
GGISITSVGASSSSSSSAVSSVVGSSAGGGSSGGGGGGGGGGGSAASGGSVTAKFRAAGG
GSSSMSSGFVSGGWEGKREGGLGAVTVSTVTKSSYSSGGSGEAKRGASSAVTYSPVPKDR
KSMTSMTGVLSEVFDESSSTNSSPEYNRKEYVTSSSTTTSSTSATRGRAQSRESEIRARL
QSASPTGGWTELDDVKRLLRGNRSTSTSPSPTQSPNNTLPIPKKGSVETRTLSESSTADH
YGSIWSGGVSSSYGYNTNHNNLSNTSTLYQSGGFQNNLTLSSPSMSGGLSAGSTVPVYGL
QNNLAGTSPAPLSPTASSTQIVYGVQKNASGPGISTTTVRPSSPTLDDTSGKDFKFVLIE
KENAPVKKETERLIMTKDTGKQFMSAAPATASGTYSEDSLKREKQKLSSSTMDEGTDAKS
ASLKVATKDKATYAEIREDKSGLGFWSCCSWWKWLLGLLLSLLLLLGLLFGLIAVGEELK
NLKKRVDALEAITGVASARTSRLSASSGINIIDPLESSYIERSAAGPTLTRSDNGINLGA
AGPGGGAVSGPAQDSAALQRTVQQLVRAELRSDAVRDTLVYSLKGERGEPGPKGDSGQLG
QKGDGGFPGLPGPPGQMGHPGLDGPRGPKGSAGEPGPEGPPGQRGREGQMGPRGEAGTPG
FGEKGEKGSQGEPGRAGPVGAAGPVGPKGTTGEHGASGSPGAPGPKGFNGEAGAPGAKGD
RGTAGLPGTKGDVGERGPRGPAGEPGQPGAQGPAGPKGSKGVGGEAGSTGLPGVRGPPGS
QGDAGPPGITGLQGPPGIAGNPGQPGGQGEPGLPGKVIGPIGSDTVAIPGPPGPAGPSGP
AGNPGLSGPIGPAGVPGQPGPKGEKGDQGDKGNKGDKGDRGEKGEQGKPGEPGVSVTQTE
AQSDKLSSGAGQPGPPGPPGPPGEPGPQGPAGESKPGPPGRRGPPGEPGEQGVGVPGPPG
VKGEPGSFVPNSDTFFAGPPGPPGPKGPEGSPGAQGPQGYQGEPGQPGLPGSPGEGSVGF
PGQPGPIGSPGPPGLGGPEGPQGPQGTSGAPGVPGVSSGSSYSPGPQGPPGPPGAPGRDG
SGSGSADVGQYIAEYLQSGNFRQYLAGPPGPPGPPGAPGNAGDGSVDDMANRVLAYIQSS
GRGYDGTPGPPGPPGPPGSVSINDIINLLQRDDVRRYVAGTPGPPGPPGAPGSGLGSYVV
NTQEVADRVISLINERGLQGVPGPPGPPGVPGNSFTDGYQTLMGPQGAPGIPGPQGPPGP
VGPPGPPGYGNYIQSNIRDYLQSVSFRGPPGPPGPPGPEGPPGPIQGLVSFAEHASRETL
KAERQEYIKSDGLTGAMFGVPGPPGPPGPPGHKGDPGVPGSRGLNLDTGDFSNMAVKVTD
YIKSHGLLRDVARGSGGVVQGPPGPPGLPGVPRQSQWVSSRENVVDVVEYIKSRGLLHDI
VREYNARVFQGPPGPPGPPGPSGFSRWFGSHGNATDLLEYIKSHGLLRDVERHNNERVSQ
GLPGPPGPPGPPGYSRLFGSHTNVTDLVEYMKTHGAIVGPPGRPGQKGDTGFPGPKGERG
ERGFPGPEGRRGQVGDRGESTLRARRRRRNVGVRDGVTDH
NT seq
4983 nt
NT seq
+upstream
nt +downstream
nt
atggataatctaactacagcccagactctcagttcaggtggagtcgctggaggaagtagc
aaaggtgataatattgcaggagggtcaggtggaagagctgcattaggaggctcgggaggc
acgagcagctcagttctgatcacatccagcagctctcatgctaccagctctggtggatct
ggaggcatcagcatcacttctgtaggagcgtcttcttcttcttcttcttcagctgtttcc
tcagttgtcgggagctcagcaggaggaggaagttcaggaggaggaggaggaggaggagga
ggaggtggttctgcagcttcggggggctcggtgacagcaaagtttagggctgctggaggg
ggttcttcaagcatgtcttctggttttgtgagtggtggctgggaggggaaaagagagggg
ggtctcggtgctgtgacagtctcaacagtgacgaagagcagctacagttcaggaggatct
ggggaagccaagagaggagcgtcctcagccgtcacgtattcacctgttccaaaagacagg
aagagcatgaccagcatgacaggagttctctcagaggtctttgacgagagttcaagcaca
aactcgtccccagagtacaacaggaaggagtatgttacatcaagttcaactactactagt
tctacttctgccaccagagggagagcgcagagcagagagagtgaaatcagagccaggcta
cagagtgcttctcctacaggaggctggaccgagctggatgatgtgaagcgcctgctgaga
ggaaaccgctccaccagcaccagcccgagcccgactcagtcccccaacaacacgctgccc
atccccaagaagggcagcgtggaaactagaaccctgtctgagagctccaccgcagatcac
tacggcagcatttggtctggaggtgtgagcagcagctacggttacaacaccaaccacaac
aacctgtccaatacctccaccctttaccagtcaggaggatttcagaacaacctgacgctc
agctctccctctatgagcggaggactttctgctggcagcaccgttcctgtgtatggcctc
cagaataacctggccggtaccagccccgctcccctctctcccactgcatccagcacacag
atagtttatggtgtgcagaaaaatgcatctggacctggaatcagcacaaccacagtgaga
cccagcagtcccactcttgatgacacttcgggcaaagactttaagtttgtgctgatagag
aaggagaacgctccggtcaagaaggagacagagcggctgatcatgaccaaagacacaggg
aagcagttcatgtctgctgcacctgctactgcttctggtacctactctgaggattcactg
aagagagagaaacagaagctatcatccagcacaatggacgaaggaacagatgctaaatct
gcctccctaaaagttgccacaaaagacaaagctacctatgcagaaatccgtgaagataag
tcaggcttgggcttctggtcctgctgcagctggtggaagtggctgctcggcctcctgctc
agtctgctactcctcctcggcctcctctttggactcatcgctgtgggtgaagaactgaaa
aacctcaagaaacgtgttgatgctcttgaagccatcactggtgttgcgtcagccaggacc
agccgcctgtcggcctcctcaggcatcaacatcatcgacccactggaatcgtcttacatc
gaaaggagcgctgctggccccaccctgacccgctccgacaatgggatcaacctgggggct
gctgggccgggaggaggcgcagtgagcggaccagcacaagacagcgctgccctgcagaga
actgtccagcagctggtcagggctgaactccgctcggacgctgtaagagacacactggta
tactcgcttaaaggggagagaggagagccaggacctaaaggtgattcagggcagctcgga
cagaaaggtgatggtggatttccaggcctgccaggtcctcctgggcagatgggtcaccca
ggactggatggaccaagaggaccaaagggaagtgcaggtgaaccaggtcctgagggacca
ccaggccagaggggccgggagggacagatgggcccccgtggagaggcaggaacaccaggt
tttggagagaaaggagaaaaaggatctcaaggcgagccgggacgtgctggtcctgttggt
gctgctggacctgtggggcccaaaggtaccacaggagagcacggtgcctctggaagtcct
ggtgctccaggtccaaaaggtttcaatggtgaagcaggagctccaggagctaaaggtgat
cgcggaacagcggggctgccgggaaccaaaggagatgtgggagagagagggccacgtgga
ccggcaggtgaaccaggacaacctggagcgcaaggccctgctggaccaaagggatctaaa
ggagttggtggtgaagcaggttcaacgggacttcctggtgtgaggggaccacctggatcc
cagggagatgctggtccaccaggcattactggcctccaaggacccccaggtattgctgga
aatccaggacagcctggtggtcaaggtgaaccaggattacctggtaaagtcatcggtcca
attggctctgatactgtggccatccccggaccaccaggccctgctgggccttcaggtcct
gctgggaaccctggtctgtccggtcccattggtccggctggtgtccctggacagcctggt
cctaagggagaaaaaggagatcaaggagacaaaggaaacaaaggagacaaaggagaccga
ggggagaagggagagcaaggaaaacctggtgagcctggtgtcagtgtgacgcagacagaa
gcccaatctgacaaactttcatcaggagctggacagcctggcccaccaggacctccaggg
cctcctggagagcctggtccccaaggtcctgctggtgagtctaaaccaggtcctccaggg
cgaagaggtccaccaggagagccaggagaacaaggtgttggtgtacccggacctccaggt
gtgaaaggagaacctggcagttttgtgcccaactcagacaccttctttgctgggccacca
ggacctccaggtcccaaaggcccagagggttcaccaggtgcccaaggaccacaagggtac
caaggtgagcctggtcaaccaggtcttccagggagtccaggggagggaagtgttggtttc
cctggtcagcctggaccgattggctctccgggtccacctggcctagggggtccagagggg
ccacaaggaccacaaggaacctctggtgccccaggagttcctggagtatccagtggtagc
tcatacagtcctggcccccaaggcccaccgggcccgcctggtgcacctggaagagatgga
agtgggtctggatcagctgatgtgggacagtacattgcagaatacctacagagtggcaac
ttcaggcagtacctggctgggcctcctgggcctcctggtcctccaggggcccctgggaat
gcaggggacgggtcagttgacgatatggccaaccgagttcttgcctacatccaaagttca
ggtagaggatatgatgggactcctggcccacctggtcctccaggtccacctggctccgtc
tctatcaatgacatcatcaatctattacagcgagacgacgtgaggagatacgttgccggc
actcctggtccgccaggacctcccggggctcctgggtcaggccttggcagctatgtagtc
aacacccaggaggtggctgatcgagtaatcagcctcattaacgagagggggctgcagggt
gtccctggacccccgggacctcctggtgttcctgggaactcgtttacagatgggtatcaa
acactcatgggccctcagggtgccccaggtatccctggtccacaaggtccacctggacca
gtaggaccacctggcccaccaggatatggaaactacatacagtcaaacattcgtgactac
ctgcaaagtgtttccttcagaggcccacctggcccccctggtccacctggacccgagggc
ccccctggtccaatccaaggactggtttccttcgctgagcatgccagcagagagacgctc
aaagcagaacgacaggaatacatcaagagtgatggtttgacaggagccatgtttggagtt
cctggtccaccaggccctcctggacccccaggacacaagggagacccaggcgtgcccggt
tccagaggcttgaatctagatactggagacttctccaatatggctgtgaaagtaactgat
tacatcaaatcccacggtctgctccgggatgttgcgagaggctccggaggtgttgttcaa
ggacctccaggacctcctggacttccaggagtgcccagacagagccagtgggtcagctcc
cgagaaaatgtggtggatgtggtggaatacatcaaatcccgcggtctgctgcatgacatc
gtgagggagtacaacgctcgtgtcttccaaggacctccaggaccacctggccctccaggt
ccctctgggttcagccgatggtttggttcccatggaaatgccacagatctactggaatac
atcaaatctcatggtctgctacgtgatgttgaacggcacaacaatgaacgcgtcagccaa
gggctcccaggaccacccggccccccaggtcctcccggatacagccgattgtttggttcc
cacacaaacgtcacagatttggtggaatacatgaaaacacatggagccatcgtgggacct
ccagggagaccaggacagaaaggggacacgggattcccagggccaaaaggagagagaggt
gaaagaggttttcctgggcctgaaggacgcagaggtcaagtcggggacagaggagaatcc
acgctgagagctagaagaaggaggaggaatgttggtgttcgagatggtgttactgaccat
tga
DBGET
integrated database retrieval system
