Semicossyphus pulcher (California sheephead): 138605271
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Entry
138605271 CDS
T10596
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul04510
Focal adhesion
spul04512
ECM-receptor interaction
spul04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138605271 (col2a1b)
04518 Integrin signaling
138605271 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138605271 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
spul00536
]
138605271 (col2a1b)
Glycosaminoglycan binding proteins [BR:
spul00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138605271 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
138605271
NCBI-ProteinID:
XP_069533518
LinkDB
All DBs
Position
Unknown
AA seq
1490 aa
AA seq
DB search
MFSFMDSRTLLLLVAAQVCLLAVVRCQEEDDQDTFSCVQDGQRYSDKDVWKPEPCRICVC
DTGTVLCDEIVCEELKDCPKPEIPFGECCPICAADQSPPIGAPGAKGQKGEPGDITDVVG
PRGPGGPMGPPGEQGPRGARGDKGEKGGSGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGNPGEAGEPGQSG
PMGPRGPSGPPGKPGDDGEAGKPGKGGERGPAGPQGARGFPGTPGLPGIKGHRGYSGLDG
AKGETGAVGSKGEAGAPGENGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGPAGPPG
PVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIPG
SKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPAG
LQGAHGPQGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSG
ASGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGARG
QPGVMGFPGPKGATGEPGKSGEKGLGGAPGLRGLPGKDGETGPAGPPGPGGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGAAGPQGLQG
PRGLPGTPGTDGPKGAIGPAGAGGTQGPPGLQGMPGERGAAGIPGPKGDRGDLGEKGPEG
ASGKDGARGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFAG
PPGADGQPGTKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVFGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGASGEKG
DAGEDGPPGPLGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGGGDRG
PPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGATGIKGDRGNTGPAGAPGAPGAPGASG
PVGPTGKQGDRGESGAQGPSGPPGPAGARGMPGPQGPRGDKGEAGEAGERGQKGHRGFTG
LQGLPGPPGQAGDQGATGPAGPSGQRGPPGPVGPAGKDGSNGLPGPIGPPGPRGRSGETG
PSGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQASGNLRQHDAEVDA
TLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVFCNM
ETGESCVLPKPASIPRKNWWSSKSKDRKHVWFGETMNGGYHFSYGDDSLAPNTAAIQMTF
LRLLSTEASQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVLDDS
CTKHTGQWGKTVFEYRSQKTSRLPIVDIAPMDIGGADQEFGVEVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggactctactgctacttgtagcagcccaagtgtgtcta
ttagccgtggtgagatgccaggaggaggacgaccaggacacctttagctgtgtacaggac
ggacagcgctatagcgacaaggacgtgtggaaaccagagccctgtcgcatctgtgtgtgc
gacactgggaccgtcctgtgtgatgaaattgtctgcgaggagcttaaagactgccccaaa
cctgaaatcccattcggagagtgttgccccatctgcgctgctgaccagtctccacccatt
ggagcacctggagccaagggtcagaaaggtgaacccggagacattaccgatgttgtagga
ccaagaggaccaggtggcccaatgggcccaccaggagagcagggaccccgaggagccaga
ggagataagggagagaagggaggctctggtccccgcggcagagatggtgagcctggcacc
cccggaaaccctggcccccctggacctccaggacctaatggaccccctggccttggcgga
aattttgctgctcagatggccggtggtttcgacgagaagtctggcggcgcacagatgggt
gtgatgcaaggaccaatgggccccatgggtcccagaggaccacctggccccaccggatca
cctggcccacaaggtttccaaggcaacccaggagaggctggagagcccggacagtctggc
cccatgggtccccgtggcccctctggaccccctggaaaacctggagatgatggcgaggcg
ggcaaacctggcaaaggtggcgagcgcggaccggccggacctcagggagctcgaggtttc
ccaggaactcctggcctgcctggcatcaagggacacagaggttactcaggtcttgatggt
gcaaagggagagactggagctgttgggtctaagggtgaggctggtgctcccggagagaat
ggtgcccctggaccaatgggccctcgcggtctgcctggggagagaggccgtcctggaccc
agtggagttgctggagctcgtggaaatgatggcctgcccggtcctgctggtcccccaggc
cctgtcggtccctctggagctccaggcttccccggctctcctggttcaaagggagaagca
ggtcccactggcgcccgtggacctgagggtgctcaggggccccgtggagaatctggcact
cctggatcacccggaccttctggtgcttctggtaaccctggtactgatggtatccccgga
tccaaaggatcagctggtgctcctggcattgctggtgctcctggtttccctggacctcgt
gggcctcccgggcctcagggagcaactggacccctcgggcccaaaggaacatctggagac
ccaggtattccagggttcaaaggagaggctggacccaaaggagaaattggaccagctggt
cttcagggagctcatggcccacagggagaggaaggaaagagaggaccccggggtgagcct
ggtgctgctggaccacttggacctcctggagagagaggagcccccggtaaccgtggtttc
cctggtcaagatggtctagctggtcccaagggagcccctggtgagcgtggaccctctggt
gccagcggtcccaagggtgccaatggtgaccctggccgtcccggagagtctggtctgccc
ggtgccagaggtctgactggacgacctggtgacgctggtcctcaaggcaaagtcggacct
tctggagctgctggtgaggacggtcgcccaggaccccccggcccgcagggagcccgtgga
cagcctggtgtgatgggattccctggacccaagggagcgactggtgagccgggcaagtct
ggtgagaagggactgggcggagctcctggtctgagaggtctgcctggcaaagatggagaa
accggccctgcaggacctcccggccccggcggtcctgctggagagagaggagagcaaggt
caacccggtccctcaggtttccagggtctacctggacctcctggcccccctggtgaggga
ggcaaacctggagaccagggagttcctggagaggcaggagctgctggtgctaccggaccc
agaggagagcgcggtttccccggagagagaggagctgccggccctcagggtctgcaggga
cctcgcggtctgcctggaactcctggaaccgacggaccgaagggagccatcggacctgcc
ggtgccggcggcactcagggaccccctggcctgcagggcatgcctggagagagaggagct
gctggcattcccggacccaaaggagacaggggcgaccttggagagaaaggacctgaaggt
gcttctggtaaagacggtgctcgaggtctcactggtcccatcggtcctcctggtcctggt
ggtcccaacggcgagaagggtgagtctggtcctgctggtccctctggagctcctggtacc
cgcggtgctcctggcgacaggggtgagactggacctcctgggcccgctggatttgctgga
cctcctggagctgacggtcagccggggaccaaaggagagcagggagagtcggggcagaag
ggcgacgctggagcccccggaccccaaggaccctctggggcccctggacctgctggtccg
acaggtgtttttggaccgaaaggtgctcgtggtgctcagggacctcctggtgccactggt
ttccctggagctgctggcagagtcggaccccctggtcccaacggtaatcccggacctgct
ggtcccgccggccctcctggtaaagatggacccaagggtgtgaggggagacggtggaccc
ccaggcaggcagggtgacgctgggctccgcggtcctgctggggcttctggagagaaggga
gacgctggagaagacggtcctcctggtcccctcggcccttcaggtcctcagggtctggct
ggttctcgtggcatcgtcggtctgcccggacagcgtggtgagagaggtttccccggtctg
ccgggaccttctggtgagcccggaaagcagggagctcctggtggcggtggagaccgtgga
ccccccgggcctgttggaccccctggactcactggacctgcaggagagcctggcagagag
ggtaacgctggatctgatggacctcctggtagagacggtgctactggaatcaagggagat
cgtggaaacaccggccctgctggtgctcctggtgcccctggtgctcctggtgcttcaggc
ccagttggtcccaccggcaaacagggagaccgaggagagtctggtgcacaaggaccttct
ggacctccaggacccgctggagccagaggaatgcctggaccccaaggaccccgcggtgat
aagggtgaggctggagaggccggagagcgaggacagaagggtcacagaggcttcacaggt
ctgcagggtctgcccggacctccaggtcaagctggagaccagggtgcgactggacctgct
ggaccttctggacaaagaggaccccctggacccgtcggccctgctgggaaggacggatca
aacggtctgccaggacccatcggaccccccggcccccgtggtcgcagtggagagaccggc
ccctctggtcccccaggaaaccccggaccccccggtcctcctggtccccctggccctggc
atcgatatgtccgccttcgctggtctgggtcagactgagaagtcccccgatcctctcagg
tacatgagagccgaccaggcttccggaaacctccgtcagcacgacgccgaggtcgacgcc
actctgaaatctctcaacaaccagattgagaacatccgcagccccgagggatccaagaag
aacccggctcgcacctgcagagacctgaagctctgtcaccctgactggaagagcggagag
tactggattgaccccaaccagggctgcaccatcgatgcaatcaaggtcttctgcaacatg
gagaccggagagtcctgtgtcctccccaagcctgccagcatcccacgcaagaactggtgg
tccagcaagagcaaggaccgcaaacacgtctggttcggagagacgatgaatggaggatat
cacttcagctacggtgatgacagccttgcacccaacaccgctgccatccagatgactttc
ctgagactgttgtccaccgaggcctctcagaacctcacctaccactgtaagaacagcgtg
gcctacatggacgcctcgacaggcaacctgaagaaggccgtgctgctgcagggctccaac
gacgtggagatcagagccgagggcaacagccgcttcacttacagcgtgctggacgacagc
tgcacgaaacacacgggacaatggggcaagacagtgtttgaatacagatcgcagaagacc
tctcgtctgcccattgtggacattgcccccatggatattggtggagcagaccaggagttc
ggagtggaagtcggagcagtctgcttcttgtaa
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integrated database retrieval system
