Semicossyphus pulcher (California sheephead): 138608470
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Entry
138608470 CDS
T10596
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138608470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spul03019
]
138608470
03036 Chromosome and associated proteins [BR:
spul03036
]
138608470
Enzymes [BR:
spul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
138608470
Messenger RNA biogenesis [BR:
spul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
138608470
mRNA degradation factors
5'-3' decay
Decapping complex
138608470
Chromosome and associated proteins [BR:
spul03036
]
Eukaryotic type
Gene silencing
piRNA pathway
138608470
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
138608470
NCBI-ProteinID:
XP_069537160
LinkDB
All DBs
Position
Unknown
AA seq
489 aa
AA seq
DB search
MATARTENVGPVVMGLNKQNGQLRGQTKPAPVQPAPTTQGKALGAPQIAGGAPQDGGGIK
FGDDWKKSLKLPPKDNRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQALVMVPTRELALQVSQISIQI
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDE
ADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKAIEDQLVTDIKPIPSSIDKSLYVAEFHTSGADCDVEEVEE
KPGRQQDST
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgccagaacagaaaacgttggcccggtcgtcatgggactgaacaagcagaac
gggcagctcagaggacagaccaaaccagctccagtacagccagcacccacaactcaagga
aaggctttgggtgcgccccagatagcaggcggtgccccccaggacggaggaggcatcaag
tttggagatgactggaaaaagagcctaaagctcccacccaaagacaacagggtcaaaacc
tcagatgtgacgtccactaaggggaatgaatttgaagattactgtctcaaaagagaactc
ctgatgggcatctttgagatgggttgggagaaaccttcccctatccaggaggagagcatt
cctatcgccctgtctggacgggatattctggctcgggctaagaacggaacagggaaaagt
ggagcttatctgatcccgctcctggagagaatagacctgaaaaaggaccacatacaggca
cttgtgatggtgcccacccgtgagctggcgctgcaggtgagccagatctccatccagatc
agcaaacacctgggaggagtgaaagtcatggcgaccaccgggggcaccaacctgcgagat
gacatcatgcgcctggatgagaccgtgcatgtggtcatcgccacgcctggtaggatcctg
gacttgataaagaagggagtggcaaaggtggaccgtgtccaaatgatggtgatggatgag
gcggataagctgttgtctcaggactttgtggtgctcatcgaggatatcatcagcttcctg
gccaagaacaggcagatcctgctctactctgcaaccttccccatcagcgtgcagaagttc
atggccaagcaccttcagaagccctatgagataaacctgatggaggagctgactctgaag
ggcattactcagtactacgcctacgtgacagagaggcagaaagtccattgcctcaacaca
ctgttctccaggcttcagatcaaccagtctattatcttctgtaactccactcagagggtg
gagctcttggccaagaagatcactcagctgggctactcctgtttctacatccacgccaag
atgatgcaggaatacagaaaccgtgtgttccacgacttcaggaatggactgtgcagaaac
ctggtctgcactgatctgttcaccagaggtatcgacatccaggctgtcaatgtagtcatc
aacttcgacttccccaagaacgctgagacttacctccatcgtattggaagatcagggagg
tttggtcaccttggcttggccatcaacctgatcacatcagaggaccgcttcaacctgaag
gccatcgaggaccagctggtgactgacatcaagcccattcccagcagcatcgacaagagc
ctctacgtggccgagttccacacgtccggcgccgactgtgacgtggaggaggtggaagag
aagccaggacgccaacaggacagcacctag
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