Semicossyphus pulcher (California sheephead): 138608950
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Entry
138608950 CDS
T10596
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138608950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spul03019
]
138608950
Messenger RNA biogenesis [BR:
spul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138608950
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
138608950
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
7tm_6
Motif
Other DBs
NCBI-GeneID:
138608950
NCBI-ProteinID:
XP_069537647
LinkDB
All DBs
Position
Unknown
AA seq
931 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGTWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKKFIEKHRHHI
RMLETILRMLDNDSVQVDAIRKIKDDVEYYLDSSQDPDFEENEFLYDDLDLEDIPQTLVA
TSPPGHSHLEDEIFQHSSSTPTSTTSSSPIPPSPATCTTENSEDDKKRGRSTDSEVSQSP
VKNGNPSSSLSSSSSSSSSSSSSCSSSSSSVSGLTSSSLVSIATIAGGGGSSSGGSSHLL
NSGGLLSNTSVGSYSNATQQPPHPSTQQQQAKNSVISPSAVSLPISITSTNSHPLPSASS
PPNASTQGLLTSNSQPLALSGPQQTSNSLGLSLGLSLGKGGMSGSITTSPMLGMPASLSS
MASLLSSSTPAPYAQAAASGTLSSGLPGSLGGISTTTTNSLVGSIGSGSITVGGPTSTTG
GLLGAAPGLSSIGSGILGLGSGQSGVQGSSLVSLSPVGGLAPGSGVGVIGSNGGSSGSAG
SGVVGGNSSLSIRPPSQQKQNGSTSYSAVLADSTTDSALNSASQSQSSQPLSLTSTANQP
KDTGPSLLGSLSLSSSSPSPAFYSEAKTMTGSSLLNGPLSYSQPSDAIKPQEPLSSLKSM
AERAALSSGMEGDVPSLHLTPDIFPSSTTAPSGPPSAPQPSLSEVSIPPSLGVCPLGPVP
LSKDQLYQQAMEEAAWTHMPHPSDSERIRCSEMQYLMRNPCPTLPFHHQVPPPHSDTVEF
YQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQG
TYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaacttcaaggtgaaatagatcgatgtctgaaaaaagtagcggaa
ggagtggaacagtttgaagacatttggcagaagcttcacaacgcagccaacgcaaaccag
aaggagaaatatgaagcagacctcaagaaagagattaaaaagctacagcgtcttcgagac
cagatcaagacgtgggtggcatccaacgagatcaaagacaaaaggcagctagtagagaac
cgcaaactcatagaaacgcaaatggagcggttcaagatagtggagagagaaacaaagacg
aaagcgtactcgaaagaaggattaggtctggcccagaaggtggacccggctcagaaggag
aaggaggaggtcggcacgtggctaacgaatacgatagacacgctgaacatgcaggtggac
cagtttgagagcgaagtggagtctctttcagtccagaccaggaaaaagaaaggagacaag
gagaagcaggatcgcattgaggagctgaagaagtttatcgagaagcatcgacaccacatc
cggatgctggagacgatcctgaggatgctggacaacgactcggtgcaggtggacgccatc
aggaagatcaaggacgatgtggagtattacctggactcgtcgcaggacccagacttcgag
gagaatgagtttctgtatgacgacctcgacctggaagacatccctcagacgctggtcgcc
acctccccgccgggacactcacacttggaggacgagatcttccagcactccagcagcaca
cccacctccaccacctcgtcctcacccatccccccctcacctgccacttgcactacggag
aactctgaggatgacaagaagaggggacgttcgacagacagtgaagttagtcagtctcct
gtgaagaacggaaacccctcctcctcgttatcctcttcctcctcctcgtcctcctcctcc
tcctcctcctgctcctcctcttcttcctctgtgtcgggactgacctcatcctcgctggtc
tctatagcgaccatcgctgggggaggaggcagcagctctgggggcagcagtcatctccta
aactctgggggtctcctctccaacacctccgtcggcagctacagcaacgccacccagcag
ccgccccacccgtcaacacagcaacagcaggccaaaaactccgtcatctccccctccgcc
gtttctctccccatctccatcacctccaccaatagccatcccctcccctccgcctcctct
ccccccaacgccagcacacaggggctcctcacttcaaactcccagcccctggctctgtca
ggaccccagcagacctccaacagcctcggcctcagtctgggtctctctctggggaaaggc
ggcatgtcgggttccatcaccaccagcccgatgctcgggatgccggcgtccctgagcagc
atggcgagcctcctgtccagctccaccccggcgccctacgctcaggcagccgcctcgggc
acgctcagctccggcctgccgggctctcttggcggcatcagcaccacaacaaccaacagc
ttagtggggtccatcggcagcgggagcatcacagtcggcgggccgacgtccacaacagga
ggtctgctgggagcagcgccgggattgtccagcatcggctctgggatcctgggtttgggc
tccgggcagtcgggggtgcaggggtcttccctggtgtctctgagcccagttgggggttta
gcgccaggtagcggagttggggtcatcgggagcaacggaggcagctcaggatcagcgggt
agcggagtggtgggagggaactcgtcgctctccatcaggccgccgagccagcagaagcag
aacggtagcactagttacagtgctgtattagcagacagcacaacagactccgccctcaac
agtgccagccaatcacaaagcagccaacccttgtctttgacctccacagccaatcagcct
aaggacactggtcccagtttactaggctctctgagtttgtcctccagctcgccgtctccg
gccttctacagcgaggccaaaacgatgactggaagcagcctgctgaacggcccgctgtcc
tactctcagccctctgacgccatcaagccccaggagcctctgagcagcctgaagtccatg
gccgagcgagcagcactcagctcagggatggagggagacgtgccctccctgcacctcacc
ccagacatcttccccagcagcactacggcaccctcgggccccccgtcagcacctcagccc
tcgctgtcagaggtcagcatccccccgtcgttgggggtctgcccgctggggccggtcccc
ctgtccaaagaccagctctaccaacaggccatggaggaggcggcgtggacgcacatgccc
cacccgtccgactccgagaggatcaggtgcagtgaaatgcagtacctgatgaggaacccg
tgccccaccctgcctttccaccaccaggtgccaccgccccactccgacactgtagagttc
taccagaggctttccacggaaaccctcttcttcatcttttactacctggagggcactaag
gcccagtatctggcagccaaagccctgaagaagcagtcctggaggttccacacaaagtac
atgatgtggttccagaggcacgaagaacccaagaccatcacggatgagtttgagcaggga
acatacatttacttcgactatgagaaatggggccaacgcaagaaggaggggttcacgttt
gagtatcggtacctcgaagaccgagacctccagtga
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