Semicossyphus pulcher (California sheephead): 138608984
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Entry
138608984 CDS
T10596
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul03013
Nucleocytoplasmic transport
spul03015
mRNA surveillance pathway
spul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138608984 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
138608984 (ddx39b)
03015 mRNA surveillance pathway
138608984 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spul03019
]
138608984 (ddx39b)
03041 Spliceosome [BR:
spul03041
]
138608984 (ddx39b)
Enzymes [BR:
spul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
138608984 (ddx39b)
Messenger RNA biogenesis [BR:
spul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
138608984 (ddx39b)
Spliceosome [BR:
spul03041
]
Complex C
Other components
EJC/TREX
138608984 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
138608984 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
138608984
NCBI-ProteinID:
XP_069537686
LinkDB
All DBs
Position
Unknown
AA seq
431 aa
AA seq
DB search
MTENDVDNELLDYEEDEVEAGGVGDVGGGDLLMRKEAVKGSYVSIHSSGFRDFLLKPELL
RAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVL
VMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEALKKDSPHIVVGTPGRIL
ALIRNKTLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRP
VCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDALEFNQVVIFVKSV
QRCVALAQLLLEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN
IAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDARTLNDVQDRFEVNISELPDE
IDISSYIEPAR
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgactgagaacgacgtggacaacgagctgctggattatgaggaggacgaggtggaggct
gggggagtcggggatgtcggaggaggtgacttgttgatgaggaaggaggcggtgaagggc
tcctacgtgtccattcactcctccggattcagagacttcctgctgaaacctgagctgctc
cgagcgatcgtggactgtggcttcgagcatccgtctgaggtgcagcatgaatgcatccct
caggcgatcctcgggatggatgttctctgtcaggccaagtctgggatggggaagactgca
gtgtttgttctggccacgctgcagcagctggagcccgtcactggacaggtgtctgtcctg
gtcatgtgtcacaccagagagctggcctttcagatcagcaaggagtacgagagattttca
aagtacatgccctctgtgaaggtggcagtgttctttggagggctgtctataaagaaagat
gaggaggctctgaagaaggactcccctcacattgtggtggggacaccgggcaggatcctg
gctctgatacgcaacaagaccctgaacctgcgtcacatcaaacacttcatcctggatgag
tgcgacaagatgctcgagcagctcgacatgcgcagagacgtccaggagattttccgtatg
accccccatgagaagcaggtcatgatgttcagcgccaccctgagcaaagagatccgccca
gtgtgcagaaagttcatgcaagatccgatggaaatctttgtggacgatgagacgaagctg
actctgcacgggctgcagcagtactacgtcaagctgaaggacaacgagaagaacaggaag
ctgttcgacctgctggacgcgctcgagttcaaccaggtggtgatctttgtgaagtcggtg
cagcgctgcgtcgcgctcgctcagctgctgttggagcagaactttccggccatcgccatc
catcgagggatgcctcaggaggaacgtctgtctcggtaccagcagttcaaagacttccag
aggagaatcctggtggccacaaacctgtttggacgagggatggacatcgagagggtcaac
atcgccttcaactacgacatgccagaagactcagacacctacctgcacagggtggctcgg
gcgggcaggttcggcacgaagggtctggccatcacatttgtgtctgatgaaggcgacgcc
cgaacgctcaacgacgtccaggaccgcttcgaggtgaacatcagcgagctgccagacgag
atcgacatctcctcctacattgaaccggcccgatag
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