Semicossyphus pulcher (California sheephead): 138611142
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Entry
138611142 CDS
T10596
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
spul Semicossyphus pulcher (California sheephead)
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
spul03000
]
138611142 (rc3h1b)
04121 Ubiquitin system [BR:
spul04121
]
138611142 (rc3h1b)
Transcription factors [BR:
spul03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
138611142 (rc3h1b)
Ubiquitin system [BR:
spul04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
138611142 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
138611142
NCBI-ProteinID:
XP_069540201
LinkDB
All DBs
Position
Unknown
AA seq
1136 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALITSPEDSQHYEEARQCVDELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSGGLMPDDGLPLDVAVTRKPS
PLTNGSGAPSLPQLIPRGTDTVSYEMLRKPMKMDGGSPSAPGSPPDPMDAVAKPGMPLPP
HAMAHQRMPADHLSGVKHMPVVPRGLPVYPPQQQLSEMCYDSRPPPSASQYEPAQYATGY
PYQQPPYVPRDYMRNPPPPSESGPPYQDPYPGYGPPERPYQAPHSGPPFSYPHPPHHDRG
RHGTYPGPPPPPQPYPSQRDGLVRMSPAPLDVPPQSAGQANSLYHQEPSARDRYPPDGYY
PPGTQPPPMRGYVRGPSYSGSQPSLDYLHRRRQELLSQLEERKVISPPPFAASPTLPHPF
PSDYPPEYGEESSKTMMKCREPDYAGQYSPWSCETIGSYIGTKDPKPKDVMVPGTMEMMN
VEAKGLREPSLEAPRRGAEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQAAGPVPAMAS
TPQNPNSKHMAMSAEYTYGNQGGWGGTSYPSHQAASSSSSQGHFSERLPMAATDREQLKI
ELQQVNQQINQQTQMRSIEAASNPLLLQRETSALAGQSVQPGQAVAAQQQQQPKWPAGGA
STTSVSSEQLSLELHQVEREIGKRTREMALENQVAHDVQQYKMKPAENGQPEHKTQLEEI
SLARGEVTNGSSSLQESAVGGSMLSLTNKTSALSLCSDPGASGSEMQKNGVVHSCS
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagcaccacaatggacggagttcctgctgtgcccaatctgcacacagaca
tttgaagagactgttcgccggcccatcagcttgggctgtggacatacagtctgcaagatg
tgcctgaacaagttgcaccgtaaggcctgtccctttgaccagacagccatcagcacagac
atcgagcagctacctgtcaacacagccctgttgcagctggtgggaggccaggttcctaag
gctcagccagttgccttgattaccagtccagaggactcgcagcattatgaggaggccagg
cagtgtgtggacgagctggccctctacctcaaacctctcagcaacaccagaggtgtgggt
ctgagcagcacagcccagagcatgctgagtcgacccatgcagaggaaactggtgactctg
gttcactgccagctggtggaggaggagggccgtgttagagccatgagagcagcccgctct
ctgggcgagagaaccgtcacagagctcatcttgcagcaccagaatccacagcagctctcc
tccaatctgtgggccgctgtgcgtgcacgagggtgtcagtttctgggcccagccatgcag
gaggaagctctaaagttggtccttcttgctttggaggatggctctgctctgtccaggaag
gtgctggttctctttgtagtccagaggcttgagccacgcttcccacaggcctctaagacc
agtataggccatgtggtgcagctcctctacagagcctcctgcttcaaggtgaccaaacgg
gatgaggattcatccctgatgcagctgaaagaggagtttcgtacttatgaggctctgcgg
cgcgagcacgactctcagattgttcagattgccatggagggtgggctgcgcatcgcacct
gaccaatggtcttctctgttatatggagatcaatctcacaagtcacacatgcagtctatc
attgataagctgcagaccccggcatcttttgctcagagtgttcaggagctgacaattgcg
ctgcagaggactggagacccagccaacctcaacaggctgcggccacacctggaactactg
gccaacattgatcccagtcctgatgctccccctcccacttgggagcagctcgagaaaggg
ttggtagcagtgaaaacagtggtgcatggcctggtggacttcatccagaaccacagcaag
aaaggagccgaccctcaacagcctcctcagcacagcaagtacaaaacatacatgtgtcgt
gacatgaagcagaagggcggctgtcctcggggagccagctgcacctttgctcactctcag
gaagagctggagaagtatcgtaagatgaataaacgtctggcggctcgcctccccggctca
ggagggctcatgccagatgacggccttcctcttgatgtagcagtgacacggaagccttcg
cccctcaccaacggcagcggtgctccctctttgccccagctcattcctcgtggcactgac
acggtctcgtacgaaatgctgagaaaaccaatgaagatggacggaggcagtcccagtgct
ccaggatcaccacctgaccccatggacgctgtggccaaacccggtatgcctctgccacct
catgccatggcccaccaaaggatgccagcagaccacctttctggggtgaagcacatgcct
gtagtacccagaggtctgcccgtgtacccccctcagcaacagctctctgagatgtgctat
gatagtcgcccaccaccctctgcttctcagtatgagcctgcacagtatgccacagggtac
ccctatcaacagccaccgtatgttcctcgggattacatgcgtaaccctcctccacccagt
gagtcaggacccccttaccaggacccctatccaggctatggccctccagagcgcccctac
caggcccctcactctggtccaccattctcctaccctcaccctcctcaccatgaccgaggt
cgccacgggacctatcctggtccaccacctcccccacagccctacccatctcagagggac
ggccttgtcagaatgagccccgcccccctggatgttcccccgcaatcagcaggacaggct
aactccctttaccaccaggagcccagcgcccgggatagataccctccagatggctactac
ccaccaggaacccagcctcctcccatgaggggttacgtcagggggccgtcatatagtgga
tcccagccgagcttggactacctgcaccgacgtcggcaggagctgttatcgcagctggag
gaaaggaaggtcatctcccctccaccatttgctgcctcccccactcttcctcatcccttc
cccagcgactaccctccagagtatggggaggagagctctaaaaccatgatgaaatgcaga
gagcctgactatgcaggacaatattctccttggtcttgtgaaaccatcggctcttacatt
ggcacaaaggaccccaaacccaaagacgtcatggttcctggtaccatggagatgatgaat
gtggaggcaaagggtctgagggaaccatctctggaggcccctcgaaggggtgcagaagta
aaggatgatgaccctattatcccattcggcccccagcccactgtttcacgctttggtgcc
atctcccgcacctcaaagacgggctaccaggccgccggccctgttccggcaatggcctcc
actccccaaaacccaaactcgaaacacatggccatgtcagcagaatacacatatggaaac
caaggaggatggggtggaacttcatacccctcccaccaagctgcctcctcttcctcctct
cagggacatttcagtgagcgcctgccgatggctgccacagacagagaacagttaaagatt
gagctgcagcaggtcaaccagcagatcaaccaacaaacccagatgagaagcatagaggct
gccagtaaccctttactgctgcagagggagaccagtgcgttggccggtcagtctgtgcag
cccggccaggcagtagcagcccagcagcagcagcagcccaagtggccagcagggggagct
agtacaacatctgtctccagcgaacagctgagcctggagctccaccaggtggagagagag
atcggcaagaggacccgagagatggctctggaaaaccaagtagcccatgatgttcagcag
tataagatgaaacctgcagagaatggacaacccgagcacaagactcagctggaagaaatc
tccctggctcgtggtgaggtgaccaacggctccagcagtctgcaagaaagtgcagtgggc
gggtccatgctgtcactgaccaataagacgtctgcgctgagcctgtgctctgatccaggt
gcctctggttcagaaatgcagaagaatggcgtcgtccattcctgctcctag
DBGET
integrated database retrieval system
