Semicossyphus pulcher (California sheephead): 138611233
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Entry
138611233 CDS
T10596
Name
(RefSeq) collagen alpha-1(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul04382
Cornified envelope formation
spul04510
Focal adhesion
spul04512
ECM-receptor interaction
spul04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138611233
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138611233
09142 Cell motility
04820 Cytoskeleton in muscle cells
138611233
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
138611233
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spul04147
]
138611233
00536 Glycosaminoglycan binding proteins [BR:
spul00536
]
138611233
Exosome [BR:
spul04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
138611233
Glycosaminoglycan binding proteins [BR:
spul00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138611233
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Somatostatin
Motif
Other DBs
NCBI-GeneID:
138611233
NCBI-ProteinID:
XP_069540316
LinkDB
All DBs
Position
Unknown
AA seq
1682 aa
AA seq
DB search
MGKSVWAVLLILFAVMLMGIGAKNCVCSGKSRCQCEGVKGSRGEKGFPGEQGLPGLEGRP
GSNGHAGPMGPKGSTGPGGPEGPKGDPGPEGKEGFAGSHGLPGIPGLQGPPGAPGAPGCN
GTDGEDGPPGNPGAHGIDGHAGPPGQPGRKGDKGIRGGYGPPGSPGPHGSDGIPGRPGAL
GSKGQGGIGSVRGPRGPKGREGPVGPPGPPGQVKEYVHGSDVLKYSKGDSGDAGEKGCKG
TTGDPGYGSHSKGAKGDKGPDGSEILGFVTEPLKGYPGDPGSLGQPGLPGRQGVVGFPGP
DGPPGQATGSYVPGLQGPPGFPGPKGDPGDPGDRYSGVPGLDGDTGDQGPPGDQGPPGPP
EDRTNRVTKGLSGIKGVKGLPGPLGYDGIYGMKGEKGEPCFECATSGTPGPPGPRGPPGG
PGANRGPGAKGDPGSPGPPGPPGTPGLNGGSGFPGPPGPKGDSSSYHTPGIKGETGDLGQ
PGRPGADGIPGFPGLPGRKGDRGPPGDSYGFPGAEGDHGYPGTPGPTGRPGPVGYPGPEG
YGPAGFPGSKGDFGVLGLPGQPGFPGQKGEPGHIHIRGLPGPPGFKGQPGIPGSPGHQGL
PGTPGIPGFPGQKGEGGDVSYPGRPGNVGPKGDKGEPGSLGLQLGGLPGRPGPQGTPGAP
GLKGDGGPGYSGPQGPPGPPGPDGGQGPGGDPGIPGQPGNPGLTGHPGVPGEKGNKGPVG
PHGLPGDKDSCKGEPGLRGQPGPDGYPGHSGSNGSPGEKGKAGLPGSGRPGAPGDPGLIG
PSVPGPHGLPGLKGSKGQSGLPGQPGLRGDLGPDGISGYGPEGLPGVPGPPGPIGAPGPD
GTRGPPGLQGMEGDPGHRGPAGRSAPPDIISGPPGYPGDPGQPGLPGIHGDPGRIGPPGQ
RGRGGAPGHPGPRGPPGDRARDGPTSEGRPGLPGDPGDPGVAGPSGPKGIKGDQGIPGAV
GRDGAPGPTGPKGVHGEPNYYGYGRPGPMGQKGEPGLNNAHAPKGQKGEPGVFGSPAPPG
FTGAKGNPGPVGLSGPPGYQGHKGSDGPPGGKGRLGPNGPPGNPGNPGGIGYAGPKGHQG
RDGIPGPPGQKGETISTEGTPGRRGETGQQGPSGNPGPPGLTVPSPPGPTGDRGSSGPPG
GSGPRGLPGREGPCVPGSKGGLGRPGTAGGPGYPGPPGPPGPTSPGLKGELGDQGRSGSP
GYGGPPGDPGPQGPPGVRGGPGGPGPRGEFGPPGIQGPPGEKGDPGYNSGPPGPPGIKGF
PGRPGSKGQPAFGEVISVQGDPGFLGPPGNKGATGSSGSSGPPGQPGRPGIKGQRGPGRA
GLPGFTGHKGDKGRSGLPGFEGQPGSPGHKGRPGLPGGVGPGYVDSFLIARHSQSMRIPD
CPPGSSLMYSGYSFLFINGNERAHGQDLGSSGSCLPRFSTMPFMFCDTESNCRYASRNDY
SYWLSTDTPMPANMVAIAGDRLASYISRCSVCEITSNVIAMHSQTTLIPECPRGWESLWT
GYSFVMQTGAGAEGSSQPLVSPGSCLESFRQVPFIECHGRGTCNYYPDSYSYWLASLDPN
YMFSKPTPRTVKGPSLQSIISRCRVCRKPWEHGTAFVMASAEPEQGLKDVQLQQDTLSWL
DKLQDKQGSTEKQNLVDALYKLSTFLQGPTDSEKQEMKRRGLRARTRRPGCKFFFWKSWT
VC
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagtctgtgtgggccgttcttctgatcctgtttgctgtgatgctgatgggcatc
ggggccaaaaattgtgtgtgcagtggaaaatcaaggtgccaatgtgaaggagtgaaaggc
agcaggggagagaaaggatttccaggagagcaaggtctcccggggctggagggccgtcca
ggatcaaatggtcacgctgggcctatgggaccaaagggcagcactgggcctggtggacct
gaggggccgaaaggagacccgggacctgagggcaaagaaggatttgctgggtctcatggt
ttaccgggtatcccaggtttgcaaggcccaccaggggccccaggggccccgggatgcaac
ggaacagatggagaagatggacctcctggtaatcccggggctcatggcattgacggacac
gcaggaccacctggtcagcccggacgtaagggagacaagggtatccgtggagggtatgga
ccacctgggagccctggaccacacggttctgacgggattcctggtcgtccaggggctcta
ggatccaagggtcaaggaggaatcggcagtgtccgaggacctcgtgggccaaagggcaga
gaaggaccagtcggcccgcccgggccgccaggtcaggtcaaggagtacgtccatgggagc
gacgtgttaaagtatagtaaaggagacagtggagatgctggagaaaagggctgcaagggt
acaacaggagaccctggttatggctctcacagcaaaggagcaaagggagataaaggaccg
gacggttcagaaatactcgggtttgtgactgaacctctaaaagggtaccctggagatcct
ggttccctgggccaacctgggctccctgggcgtcaaggtgttgttgggtttcctggacct
gacggacctccaggccaggcaactgggagttatgttccaggcctacagggcccccctggc
tttccaggccccaaaggagaccctggggatccgggggatcgttattcaggagttcccggt
ctggatggagatactggtgatcaagggccccctggcgatcagggcccacctggacctcct
gaagaccgaactaacagggtcaccaagggtctctcaggaataaagggagtaaagggattg
cctggacctctgggatatgatgggatatatggaatgaaaggagagaagggggagccttgt
tttgagtgtgccacatcaggaacgcccggaccgccggggccccgtggtccacctggcggc
cctggtgccaaccgaggaccaggtgcgaaaggtgatccaggatctccaggccctccaggc
cctcctggaacaccaggcctgaatggtggaagtgggtttccaggccctcctggaccgaag
ggagactcatcttcctaccacacccctgggataaagggagagacgggagacctgggacag
cctggcaggcctggcgcagatggcattcccgggtttccagggctgccaggtcgcaaaggt
gatcgagggcctccgggggattcgtacggcttccctggggcagagggagaccatggttac
ccaggtacaccagggcctacgggcagaccaggaccagttggctaccctgggccagagggg
tatgggcctgctggatttccaggaagtaaaggagattttggtgtacttggcctgccagga
cagcctggatttccaggccagaaaggggaaccaggtcatatccacatcagaggacttcct
ggacctcctggatttaaaggtcaacctggcattcctggaagcccgggccatcaaggactg
ccaggtaccccgggaataccaggttttccaggacagaaaggagaaggaggggacgtgtca
tatcctggaaggccagggaacgtaggaccaaaaggtgacaagggcgagccaggttctcta
ggcctccaacttgggggtttgcctgggcgcccaggtccacaaggtactcctggtgctcca
ggactgaagggtgatggtggccctggatactctggtccccaaggacccccagggcctcca
ggaccagacggaggtcaggggcctggaggagatcccggcatccctggccaacctgggaac
ccaggactaactggtcatcctggagttccaggagaaaaaggaaataaaggtcctgtaggc
ccccatggactacctggcgataaagactcttgcaaaggtgaacctggactgaggggacaa
ccaggaccagatggttatccaggacattcaggatcgaatggctcaccaggtgagaaaggg
aaagcaggtttgccagggtctggtcgtcctggcgcccctggtgatcccggtctcatcggg
ccatcagtaccaggtccacatgggcttcctggactaaaaggaagcaaaggacaaagcggc
ctgcctggccaaccaggactgagaggagaccttggaccagatgggatatcaggatatgga
ccagaaggacttcctggagtcccaggaccaccaggcccaatcggtgctcccggcccggat
gggacaagaggtcctccaggtctccaaggcatggagggggacccaggtcacagaggtcct
gctggccgttccgcacctccagacataatttctgggcccccagggtaccctggcgatcca
ggtcaacctggtctacctggtatccatggagaccctggaagaataggaccaccgggacag
agagggagagggggagcaccaggacaccctggaccaagaggtcccccgggtgatcgagct
agagatggaccaacttcagaagggaggccgggacttcccggagacccaggagacccagga
gttgcagggccttctggtccaaaaggcatcaaaggagatcaaggaatccctggcgctgtt
ggtcgagatggtgcaccaggtcccactggtcccaaaggagttcatggagagccaaactat
tatggatatggtcggcctggacccatgggacaaaagggcgaacctggattgaacaatgca
catgccccgaagggtcagaaaggtgaacctggtgtgtttggatcccccgctccaccagga
ttcactggagccaaagggaacccagggcctgtgggactaagtggtccacctggttaccaa
gggcataagggttcagatgggcctccaggaggaaaaggacgcctaggacctaatggaccg
ccaggtaacccgggtaacccaggtggcattggttacgctggtcctaaaggccaccagggt
cgggatgggatccctggaccaccagggcaaaaaggagagacgatctcaacagaagggaca
cctggcaggcgtggtgaaacaggtcaacaaggtccttctgggaaccctggtccccctggc
ttaactgtcccatcgccacctggaccgacaggagacagaggatcgtcaggtccaccaggg
ggctctggtccaaggggactaccaggaagagaaggcccttgtgttcctggatcaaaagga
ggccttggacgtcctgggacagctggaggaccaggctatcctggcccacctggacccccg
gggcccacaagtcctgggttaaaaggagaactaggggaccaaggtcgttctggaagccca
ggctatggtggaccccctggagatccaggtcctcaaggaccccctggtgtaagaggagga
cctggaggccccggaccaagaggtgaatttggtccccctggaatccaaggcccccctggt
gaaaaaggagaccctggatataactcaggcccgcctggtccacctgggataaaaggtttt
cctggaagacctggctcaaagggtcaaccagcatttggcgaggtgatatctgtacaggga
gatcctggttttctcggtccccctggaaataagggagccacagggagctctggatcatca
ggaccaccaggccaaccaggccggccaggcatcaaaggacagcgtggacctggccgagct
ggcctgccaggatttaccggccacaaaggagacaaaggaagatcaggactgccaggtttt
gagggacaacctggaagcccaggacacaagggtcgcccagggttgccaggcggagttggt
ccaggttatgtggacagtttcctgatagcaagacacagtcagagtatgcgtatacctgac
tgccctcctggcagcagcctcatgtactctggttactccttcctcttcattaatggcaat
gagagagctcacggtcaagacctcggttcctcgggaagttgtctccctcgattctccacc
atgcccttcatgttctgtgacacagaaagtaactgccgctacgcttctcgtaacgactac
tcctactggttgtccactgacacgcctatgcctgccaacatggtggccatcgcaggggac
aggctggcatcttacatcagcaggtgctccgtgtgtgagatcacctccaatgtcatagcc
atgcacagccagacaactctgatacctgagtgtccccgaggctgggagtccctgtggact
ggatactcatttgtcatgcaaacaggtgctggagcagagggctcctctcagccgctggtt
tctcccggctcatgtctggaaagtttccgccaagtgcccttcatcgagtgtcacggcaga
gggacatgtaactactaccctgattcctacagctactggctggcctccctggaccccaac
tacatgttcagtaaaccaactcctcggacagtgaagggaccttctctacaaagtatcatc
agccgttgtcgagtctgcaggaaaccatgggaacatgggaccgcatttgttatggcaagt
gcagagccagagcagggattaaaagatgtccaacttcaacaagacacattgtcgtggctc
gacaaactacaggacaaacagggatcgacagagaaacagaacttggtggacgcgctatac
aagctctccacattcctccaaggcccgacagactcagagaaacaggagatgaagagacga
ggcctgagagctcggacccgcagacccggctgcaaattcttcttctggaaatcctggact
gtctgctaa
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integrated database retrieval system
