Semicossyphus pulcher (California sheephead): 138611443
Help
Entry
138611443 CDS
T10596
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul03030
DNA replication
spul03410
Base excision repair
spul03420
Nucleotide excision repair
spul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
138611443 (lig1)
03410 Base excision repair
138611443 (lig1)
03420 Nucleotide excision repair
138611443 (lig1)
03430 Mismatch repair
138611443 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spul03032
]
138611443 (lig1)
03400 DNA repair and recombination proteins [BR:
spul03400
]
138611443 (lig1)
Enzymes [BR:
spul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
138611443 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
138611443 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
138611443 (lig1)
DNA replication proteins [BR:
spul03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
138611443 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
138611443 (lig1)
DNA repair and recombination proteins [BR:
spul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
138611443 (lig1)
NER (nucleotide excision repair)
Other NER factors
138611443 (lig1)
MMR (mismatch excision repair)
Other MMR factors
138611443 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
138611443
NCBI-ProteinID:
XP_069540651
LinkDB
All DBs
Position
Unknown
AA seq
1012 aa
AA seq
DB search
MQRSIASFFQPKGKDTQKKTTDETVKKSVKSPLKVQNGVQEADSPVKKVTKRSRQILDSD
DDEAPVVKDQVATKGQGDKEAVGKTEKKDDVFKAVPTPLSPPPAPATPVTPTTPATPASS
ASPGTPGTPNSISPSGIVKRKTARKMFPKRKLESRSGSESQKDEAEVEEEQGQQNKRPRV
DSGGSSAGNTDEPMEEGAKEERVEKKVTEANSPDEEVEKKKKGEEEKAKEEERAERQSSD
EEEKKAEGAVKKNEAKEKTDDETGSVVAKKAVVEKDTQEEEEEEESPKSQTVKKQKEAKE
QKDKEPPKKAPISSFFAPRKSAVKTEKPEKNEGEKKTSAERKTSAEESKETKGESASGQT
DYDPSRSSYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLFRSVLLLSP
DDLLCCVYLCLNQLGPAHLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAE
SSRSNQRTMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVR
SLAGKLRIGLAEQSVLSALSQAVCLTPPGQVFPPAVIDAGKGMSTESRRAWIEEKSLILK
QTYCEMPNYDVLIPVLLKEGIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFT
CEYKYDGERAQIHILESGEVRVFSRNQEDNTSKYPDIIARIPKVKKDSVVSCVLDSEAVA
WDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRALLRE
SFSEVEGEFVFARYIDSDNTETIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLK
LKKDYLEGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDEENEEFQSVCKIGTGFKDED
LEQHYKFLKEHILPKPRAYYRFDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGLVDP
VKGISLRFPRFLRIRDDKKPEDATSAAQIADLYKKQQQIQNQGEKADPEDYY
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatctttctttcagcccaaaggaaaggatactcagaagaagact
acagatgaaacagtgaaaaaatctgtcaaaagccctctcaaggtgcagaacggcgtgcag
gaagctgattcacctgtcaagaaggttaccaaacgcagccgtcagatcctggatagcgat
gatgatgaagcgccggtggttaaagatcaagtcgccaccaagggacaaggagacaaagaa
gctgttggaaaaacagaaaagaaggacgatgtgtttaaggccgttcctactcccctttct
cctccacctgcccctgccacccccgtgacccccaccactccagccaccccggcctcttcg
gcttcacccgggaccccaggcaccccgaactccatctcgccctctgggattgtgaaacgc
aagactgcgaggaagatgttccccaagaggaagctggagagccgcagcggcagcgagagt
cagaaggacgaggccgaggtcgaggaggagcagggtcagcaaaacaaacgacctcgcgtt
gacagcggcggcagcagtgcagggaacacagatgaacccatggaggagggagcaaaggaa
gaaagagttgaaaagaaagtgacagaggctaacagcccagatgaggaggtggagaagaag
aaaaaaggggaagaagagaaggccaaggaggaggagcgggccgagagacagagctctgat
gaggaagaaaagaaagccgagggggcggtgaagaaaaatgaagcaaaggagaagacagat
gatgagacggggtctgttgttgccaagaaggcggtggttgaaaaggacacgcaagaagaa
gaagaagaagaagagagcccaaaaagtcaaacagtgaaaaaacagaaagaggcaaaagag
cagaaagataaggagccgcccaagaaagcccctatcagcagtttctttgctcccagaaaa
tctgcagtgaagacggagaaaccagagaagaatgaaggagagaaaaagacgagtgcagag
aggaagacatcggcggaggagagtaaagagacaaaaggtgagtcagcctcaggacaaacg
gactacgatccatccagatccagctaccatccagtggaccacgcatgctggaagcagggc
caaaaagtaccatacttggcggtggctcgcaccttcgagaagatagaagaggactctggc
aggctgagaaacatcgagacgttgtcgaacctgtttcgctccgtgctgctgctctctcca
gatgacctgctgtgctgtgtgtacctgtgtttgaaccagctgggtcctgcccacctgggg
atggagcttggcgttggagagacggtgctgatgaaagctgttgctcaagcaactgggcga
caattggacaaaatcaaggcagaggcgcaggagaaaggagatctgggtcttgtggccgag
agttcccgcagcaaccagcgcacgatgttccaaccggccagcctgacagcagggggcgtg
ttcaggaaattgaaggaaattgcaagcatgagtggaaactcggccatgaataagaaaatc
gacatcatcaaaggcctctttgtggcatgccgcttttccgaggcccgctacatcgtcagg
tccctagctgggaagctgaggataggcctggctgagcagagtgtcctatcagcactgagc
caggctgtgtgcctcaccccacctggacaagttttccctcctgctgtgattgacgctggg
aaggggatgagcacggagagcaggcgggcttggatcgaagagaagagtctcattctcaaa
cagacttactgcgagatgcccaattacgacgtcctgatccccgttcttctaaaagagggc
atagaccagctgcccaatcactgcaagctcactccaggtgtaccgctgagacccatgttg
gctcaccccaccaagggtgtcggcgaggtgatgaagaggtttgacgaagcagcgttcacc
tgcgagtataaatacgacggagagcgtgcacagattcacattcttgagagtggcgaggtt
cgagtattcagccgcaaccaggaggacaacaccagcaaataccccgatatcatcgctcgc
attcccaaggtgaagaaggactcggtggtatcctgtgtcctggactctgaggcagtcgcc
tgggatcgtgagaagaagcagatccagcccttccaggtcctcaccacccgtaagagaaag
gacgtggatgcctcggagatcaaagtccaagtgtgtgtgtacgcctttgacctcctctat
ctcaacggcgagtccttggttcgacagccgttgtgtcggcgtcgggctctgctgagagaa
agcttctcagaggtggagggagagtttgtgttcgcccgctacatcgactctgacaacaca
gagaccatcgcagagttcctggagcagtctgtccgagactcctgcgagggcctcatggtg
aagactctggagaaggacgccacctatgaaattgccaagcgctctcataactggctcaag
ctgaagaaggactacctggagggggttggtgacacagtggacctgtgtgtcattggcgct
tatctggggaaaggcaagaggacgggcacctatggaggcttcctgctggcctgctacgac
gaggagaacgaggagtttcagtctgtctgcaagatcgggacaggcttcaaggatgaggat
ctggagcagcattacaagttcttaaaggagcacattttgcccaagccccgcgcctactac
cgcttcgaccaatcagcagagcccgacgtgtggctggacgccgtgcaggtttgggaggtg
aaatgcgccgacctgtcgctgtctcccgtctacaaggctgccatgggactggtggatcca
gtgaaaggcatttctctgaggttcccccgcttccttcggatcagagacgacaagaagccc
gaggacgccaccagtgcagctcagatcgctgatctgtacaagaagcagcagcagatccag
aaccagggggagaaagctgatccggaggactactactga
DBGET
integrated database retrieval system
