Semicossyphus pulcher (California sheephead): 138612077
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Entry
138612077 CDS
T10596
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
spul Semicossyphus pulcher (California sheephead)
Pathway
spul03013
Nucleocytoplasmic transport
spul03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spul00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
138612077
03015 mRNA surveillance pathway
138612077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spul03019
]
138612077
Enzymes [BR:
spul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
138612077
5.6.2.5 RNA 5'-3' helicase
138612077
Messenger RNA biogenesis [BR:
spul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
138612077
mRNA cycle factors
Common to processing body (P body) and stress granule
138612077
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
NAT10_TcmA_helicase
DEAD
SRP54
UvrD-helicase
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
138612077
NCBI-ProteinID:
XP_069541485
LinkDB
All DBs
Position
Unknown
AA seq
1112 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGLLQNGDDPVVKASQLLAELNFEEDEEDTYYTKDLPSHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRTSNMYFQTHDQIGMIGTGPSPMTSMNI
PIPFNLVMPPIPPPGYMGQVNGPTGGRGGGMKGKSGGGGGGGARGGRQRNRGNMGNHGGG
DRGQHGGHMSGSQASQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDE
FKSQIDVALSQDSTYQGERAYQHGGLTGLSQY
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcgcagactctaacgttcctcgacaccgaggag
accgagctgctgggagcggacacccagggctccgagtacgacttcaccgatttcactctg
ccgagccagacccagactcaaggccagacccagagccagctggacaaccaggttaatggc
cctgacggcttgttacagaatggagatgaccctgtagtaaaagccagtcagctgctggca
gagttgaactttgaggaggatgaggaggacacctactacaccaaggatcttccctcacat
gcttgcagttactgcgggattcatgatccagcctgtgtggtctactgcaacaccagcaag
aagtggttctgtaacggccgtggaaacacatccggcagccacattgttaaccacctggtg
agagcaaagtccaaggaggtgaccctacataaagacggccctctgggggaaacagtactg
gagtgctacaactgcggctgtcgcaacgtcttcctcctgggcttcatccccgctaaagct
gactcagtagtggtgttactgtgcaggcagccatgtgcgagccagagcagcctgaaggac
atcaactgggacagctcgcagtggcagccgctcatccaggaccgctgcttcctgtcctgg
ctcgtcaaaatcccgtcagagcaggagcagctcagggctcgtcagatcaccgcccagcag
atcaacaagttggaggagctctggaaggaaaatcccactgcgaccttggaagacctggag
aagcccggtgtggacgaggagccccagcatgtgctgcttcgctacgaggatgcctaccag
taccagaacatctttggtcctcttgtgaagctggaggctgactacgacaagaaactcaaa
gagtcccagactcaagacaacatcacggtcagatgggacttgggcctgaataagaagagg
atcgcttatttcactcttccaaagacagactcggacatgcgcctgatgcagggagatgaa
atttgcctgcggtacaaaggagacctggcccctccttggaaaggcatcggacatgtgatc
aaagtccctgacaattacggtgatgagatcgccatagagctgaggagcagtgccggggct
ccagtggagatcccacacaacttccaggtcgactttgtgtggaagtccacgtcctttgac
aggatgcagagcgctctgaagacctttgctgtggatgagacttcagtgtctggttacatc
taccacaaactgctgggacacgaggtcgaggatgtgatcatcaaatgtcagctgcccaaa
cgcttcactgctcagggcctgcctgaccttaaccactcccaggtgtatgctgtgaagacg
gtgctgcagcgtcccctcagtctgatccagggtcctcccggcacaggaaagacggttacc
tctgccaccatcgtctaccacctggctagacagggcaacgggccagtgctggtgtgtgct
cccagcaacattgccgtcgaccagctgacggagaagatccaccagactgggctgaaggtg
gtgcggctgtgtgcaaagagcagggaggccatcgactcgcctgtgtccttcctggctctt
cacaaccagacccgtaacatggacagtatgcccgaacttcaaaagctccagcagctgaag
gacgagaccggagagctgtcctcctcggacgagaagcgctacagggcgctgagacgcact
gctgagagggagctgctaatgaatgccgatgtgatctgctgcacctgtgtcggtgcgggc
gatcctcgtctggccaagatgcagttccgctcaatcctgattgatgagagcacacaggcc
actgagccagagtgcatggtgcctgttgtcctgggggccaaacagttgattctggtgggc
gatcactgccagctgggccctgtggtgatgtgtaagaaggcagctaaagccggtctgtcc
cagtctctgttcgagcgtctggtagttttggggatcagaccgatccgtctgcaggtccag
taccgcatgcacccggccctcagcgccttcccctccaacatcttctatgagggctctctg
cagaatggagtcactgccggcgaccgtgtgaagaaaggctttgacttccagtggcctcag
cctgacaagccgatgttcttctatgtcacccaaggccaagaggaaattgccagctctgga
acatcctacctcaacaggactgaggcagccaatgtggagaaaataaccacgaggttgctg
aaggccggagcgaaaccagatcagatcggcatcattacgccctacgagggacagaggtcc
tacctggtccagtacatgcagttcagtggctccctccataccaaactctaccaggaggtg
gaaatagccagtgtggacgcctttcaaggcagagagaaggacttcatcatcctgtcctgt
gtgagggccaatgagcaccagggcatcggcttcctcaatgatccccgacgtcttaacgtg
gcgctcaccagggccaggtatggtgtgatcattgtgggaaacccaaaggccctgtccaag
cagcctctgtggaaccacctgttgaactactacaaggagcagaaggtcctggttgaaggg
ccccttaacaacctgagggagagcctcatgcaatttagcaagccccgcaagctggtcaac
accatcaaccctggcggtcgattcatgagcacagccatgtatgatgccagggaggccctg
attcctgggtctgtttatgaccgcagcagcaacggacgtacatcaaacatgtatttccag
acccatgaccagattggaatgattggcacaggccccagtcccatgacatccatgaacatc
cccatccccttcaacctcgtgatgccccccatacctccgccggggtacatgggacaggtc
aatggacccacaggaggtcgcggtggaggaatgaaaggcaagtcaggcggtggaggagga
ggtggggctcgaggtggccgccagcgaaaccggggcaacatggggaaccacggaggagga
gaccgagggcagcatggaggccacatgagcggcagccaggccagccaggacctgggctcc
cagccgttctctcaggggcctctgacgcagggctacatcaacatgagccagccgtcacag
atgagccagcctggactctcccagcctgaactctcacaggacagttaccttggagacgag
ttcaagtcccagattgatgtggctctgtcccaggactccacctaccagggggagcgggcc
taccaacacggtggtctgactggactgtcccagtactag
DBGET
integrated database retrieval system
