Streptomyces fodineus: BFF78_12560
Help
Entry
BFF78_12560 CDS
T05140
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spun
Streptomyces fodineus
Pathway
spun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BFF78_12560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spun03019
]
BFF78_12560
03016 Transfer RNA biogenesis [BR:
spun03016
]
BFF78_12560
Enzymes [BR:
spun01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BFF78_12560
Messenger RNA biogenesis [BR:
spun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BFF78_12560
Transfer RNA biogenesis [BR:
spun03016
]
Prokaryotic type
tRNA degradation factors
BFF78_12560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_PNO1_2nd
KH_2
KH_KhpA-B
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AOR31771
UniProt:
A0A1D7Y885
LinkDB
All DBs
Position
complement(3115667..3117886)
Genome browser
AA seq
739 aa
AA seq
DB search
MENETHYAEAVIDNGAFGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQ
LDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAVLTCRLIDRPLRPSFKKGLRNEIQV
VCTVMALNPDHLYDVVAINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDA
VFDMVVAGRVLEDGDVAIMMVEAEATEKTLKLVEGGTEAPTEEVVAAGLDAAKPFIKVLC
RAQSDLAAKAAKPTGEFPIFLDYQDDVLEALTAAVKPELAQALTIAGKQEREAELDRVKG
LAAEKLLPEFEGREKEISAAYRSLTKTLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPR
VHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSTGETGRVGSP
KRREIGHGALAERALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVP
LKAPVAGIAMGLISQEIDGETHYVTLTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLD
GIPASVLAAALKQARDARLHILDVMMEAIDRPDEMSPHAPRIITVKIPVDKIGEVIGPKG
KMINQIQEDTGAEITIEDDGTIYIGAADGPSAEAARATINGIANPTMPEVGERYLGTVVK
TTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL
VPVIEGEEGNDSDKDDAEQ
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
gtggagaacgagacccactacgccgaggctgtcatcgacaacggcgccttcggcacccgc
acgatccgcttcgagacgggccgcctggccaagcaggccgccggttccgccgtggcgtac
ctggacgacgacaccatggtgctgtcggccaccaccgcctccaagaaccccaaggaccag
ctcgacttcttcccgctcacggtggacgtcgaggagcggatgtacgccgccggcaagatc
cccggcagcttcttccgccgcgagggccggccgagcgaggacgcggtcctcacctgccgc
ctgatcgaccgcccgctgcgcccgtccttcaagaagggcctgcgcaacgagatccaggtc
gtctgcacggtcatggcgctcaaccccgaccacctgtacgacgtcgtggcgatcaacgcc
gcgtccgcgtccacgcagctggccggtctgcccttctccggcccgatcggcggcgtccgc
gtcgcgctgatccgcggccagtgggtcgccttcccgacgcacaccgagctcgaggacgcc
gtcttcgacatggtcgtcgcgggccgcgtcctggaggacggcgacgtcgcgatcatgatg
gtcgaggccgaggccaccgagaagaccctcaagctggtcgagggcggcaccgaggcgccg
accgaggaggtcgtcgccgccggtctcgacgccgcgaagcccttcatcaaggtgctctgc
cgcgcccagtccgacctcgccgccaaggcggccaagccgaccggcgagttcccgatcttc
ctggactaccaggacgacgtcctggaggccctgaccgccgcggtcaagcccgagctcgcc
caggcgctcaccatcgccggcaagcaggagcgcgaggccgagctggaccgcgtcaagggc
ctggccgccgagaagctcctgccggagttcgagggccgcgagaaggagatctccgccgcg
taccgctcgctgaccaagaccctggtccgtgagcgcgtcatcaaggagaagaagcgcatc
gacggccgtggcgtgacggacatccgtacgctcgccgccgaggtcgaggccatcccgcgg
gtgcacggctccgcgctgttcgagcgtggcgagacccagatcctgggcgtcaccaccctc
aacatgctccgcatggagcagcagctggacaccctctccccggtgacccgcaagcgctac
atgcacaactacaacttcccgccgtactccaccggtgagaccggccgcgtcggctccccc
aagcgccgcgagatcggccacggcgcgctcgccgagcgcgccctggtgccggtgctgccg
acgcgcgaggagttcccgtacgcgatccgtcaggtgtccgaggccctcggctccaacggc
tcgacgtccatgggctcggtctgcgcctccaccatgtcgctgctgaacgccggtgtgccg
ctgaaggccccggtcgccggtatcgccatgggcctgatctcccaggagatcgacggcgag
acgcactacgtcaccctcaccgacatcctcggtgcggaggacgccttcggcgacatggac
ttcaaggtcgccggcaccaaggagttcgtgaccgccctccagctcgacaccaagctggac
ggcatcccggcctccgtcctggccgcggccctcaagcaggcccgcgacgcccgcctgcac
atcctcgacgtgatgatggaggccatcgaccggcccgacgagatgagcccgcacgccccg
cggatcatcaccgtcaagatcccggtcgacaagatcggtgaggtcatcggccccaagggc
aagatgatcaaccagatccaggaggacaccggcgccgagatcaccatcgaggacgacggc
acgatctacatcggtgccgccgacggcccctccgccgaggccgcccgcgccacgatcaac
ggcatcgccaacccgacgatgcccgaagtcggcgagcgctacctcggtacggtcgtcaag
acgaccaccttcggtgcgttcgtctccctgctgcccggcaaggacggtctgctgcacatc
tcgcagatccgcaagctcgccggcggcaagcgcgtggagaacgtcgaggacgtcctcggc
gtgggccagaaggtccaggtcgagatcgccgagatcgactcccgcggcaagctctccctc
gttcccgtgatcgagggcgaggaaggcaacgactcggacaaggacgacgccgagcagtga
DBGET
integrated database retrieval system
