Streptomyces fodineus: BFF78_14330
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Entry
BFF78_14330 CDS
T05140
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
spun
Streptomyces fodineus
Pathway
spun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BFF78_14330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spun03021
]
BFF78_14330
03019 Messenger RNA biogenesis [BR:
spun03019
]
BFF78_14330
Transcription machinery [BR:
spun03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BFF78_14330
Messenger RNA biogenesis [BR:
spun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BFF78_14330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOR32081
UniProt:
A0A1D7Y936
LinkDB
All DBs
Position
complement(3517940..3519928)
Genome browser
AA seq
662 aa
AA seq
DB search
MSDTTDLMGARVEETAAAPATDASAPATGAGSRRRRGTGLEGMVLAELQQVASGLGIRGT
ARMRKSQLIEVIKEAQAAGGAAPKAETAAEAKPKRRATSKARTGESAESGESTAKKAEAK
TEAPAEKAVAQQQIEIPGQPASDDAPTERRRRRATADAGSPAASSAETVAAEAKAEPKAE
TPAQPQAQGEATKGDAGDGEGRGRRDRRERGRDRDRDRRGKGDDQQGGQRQQQGQQQGGG
RQDRQQQDDDDFEGGRRGRRGRYRDRRGRRGRDDIAEPQLAEDDVLIPVAGILDILDNYA
FIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHVTGAVRQPKEGERREKFNALVRLDSVNGM
APEHGRGRPEFNKLTPLYPQDRLRLETDPGVLTTRIIDLVSPIGKGQRGLIVAPPKTGKT
MIMQAIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVISSTFDRPAEDHTTVAEL
AIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFFGAAR
NIEDGGSLTILATALVDTGSRMDEVIFEEFKGTGNMELKLDRKLADKRIFPAVDVDASGT
RKEEILLGAEELGIVWKLRRVLHALDQQQAIELLLDKMKQTKSNVEFLMQIQKTTPTPGN
GD
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgcacgtgtcgaggagaccgctgccgcgcccgcc
acggacgcctccgcgcctgccaccggtgccggctcccggcggcgccgcggtaccggcctc
gagggcatggtgctggccgagctgcagcaggtcgcctcgggcctcggcatcaggggcacc
gcgcggatgcgcaagagccagctgatcgaggtcatcaaggaggcgcaggccgccgggggt
gccgcccccaaggccgagaccgccgccgaggccaagccgaagcgccgcgccacctccaag
gcccgcaccggcgagtccgccgagagcggcgagagcacggcgaagaaggcggaggccaag
accgaggcgcccgccgagaaggccgtggcccagcagcagatcgagatccccggccagccg
gcctccgacgacgcccccaccgagcgccgtcgccgccgcgccaccgccgatgcgggcagt
cccgccgcgagcagcgccgagacggtcgccgccgaggccaaggccgagcccaaggccgag
acgcccgcccagccgcaggcgcagggcgaggccaccaagggtgacgccggtgacggcgag
ggccgtggccgccgcgaccgccgcgagcgcggccgtgaccgtgaccgcgaccgccggggc
aagggcgacgaccagcagggcggccagcgccagcagcagggtcagcagcagggcggcggc
cgtcaggaccgccagcagcaggatgacgacgacttcgagggcggccgtcgtggccgtcgt
ggccgctaccgtgaccgccgtggccgtcgtggccgcgacgacatcgccgagccgcagctg
gccgaggacgatgtcctgatccccgtcgcgggcatcctcgacatcctcgacaactacgcc
ttcatccggacctccggctacctgccgggcccgaacgacgtgtacgtctccctcgcccag
gtccgcaagaacggcctgcgcaagggcgaccacgtcaccggtgcggtccgtcagccgaag
gagggcgagcgccgcgagaagttcaacgcgctggtccgcctcgactccgtcaacggcatg
gcgcccgaacacggccgtggccgcccggagttcaacaagctgaccccgctctacccgcag
gaccgcctccgcctggagacggacccgggcgtgctcaccacccgcatcatcgacctggtc
tcgccgatcggtaagggccagcgcggtctgatcgtggccccgccgaagaccggcaagacc
atgatcatgcaggcgatcgccaacgcgatcacgcacaacaaccccgagtgccacctgatg
gtcgtcctcgtcgacgagcgtccggaagaggtcaccgacatgcagcggtcggtcaagggc
gaggtcatctcctcgaccttcgaccgcccggccgaggaccacaccacggtcgccgagctc
gccatcgagcgcgccaagcgtctggtggagctgggccacgacgtggtcgtcctgctggac
tccatcacgcgtctgggccgcgcctacaacctggcggcgccggcctccggccgcatcctg
tccggtggtgtcgactccaccgcgctgtacccgccgaagcggttcttcggtgcggcgcgc
aacatcgaggacggcggttcgctgaccatcctggccacggctctcgtggacaccgggtcc
cgcatggacgaggtgatcttcgaggagttcaagggcacgggcaacatggagctgaagctc
gaccgcaagctcgcggacaagcggatcttcccggccgtggacgtggacgcctccggtacc
cgtaaggaagagatcctgctcggtgccgaggagctgggcatcgtctggaagctgcgtcgt
gtgctgcacgcgctcgaccagcagcaggcgatcgagctgctgctcgacaagatgaagcag
accaagtcgaacgtcgagttcctgatgcagattcagaagacgacgccgacgccgggcaac
ggagactga
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