Streptomyces fodineus: BFF78_18645
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Entry
BFF78_18645 CDS
T05140
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
spun
Streptomyces fodineus
Brite
KEGG Orthology (KO) [BR:
spun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spun03016
]
BFF78_18645
Enzymes [BR:
spun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BFF78_18645
Transfer RNA biogenesis [BR:
spun03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BFF78_18645
Prokaryotic type
tRNA splicing ligases
BFF78_18645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AOR32814
UniProt:
A0A1D7YBC9
LinkDB
All DBs
Position
complement(4445113..4446306)
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AA seq
397 aa
AA seq
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MSYVEMPGAKVPIRMWTDPATVEDVALRQLQNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMQGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRGMHEDPVEPG
DFHGLATAGWEDFWGRFDGVAEAVRFRQERAHKQMGTLGSGNHFCEICIDVSGSVWLMLH
SGSRNIGKELAEHHIGVAQKLPHNQGLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNR
TLMMALLKDVIRKEFKKAKPAFEPEISCHHNYVSQERYDGMDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNEKAFNSASHGAGRRMSRNAAKKRFSTKDLEEQTRGVECRKDSG
VVDEIPGAYKSIDQVIDQQRDLVQVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtggagatgccgggcgcgaaggtccccatccggatgtggacggaccccgcg
acggtcgaggacgtggccctgcgccagctccagaacgtggcgaccctgccgtggatcaag
ggcctggccgtgatgccggacgtccactacggcaagggcgcgacggtcggctcggtcatc
gccatgcagggcgcggtgtgcccggcggcggtcggggtggacatcgggtgcgggatgtcg
gcggtgaagacgtcgctgacggcgaacgacctgccgggcgacttgtcgcggctgcggtcg
aagatcgagcaggcgatcccggtggggcggggcatgcatgaggaccccgtggagccgggg
gacttccatgggctggcgactgccgggtgggaggacttctgggggcggttcgacggggtc
gcggaggcggtgaggttccgtcaggagcgggcgcacaagcagatggggacgcttggaagc
ggcaaccacttctgtgagatttgcatagatgtgtccggttctgtgtggctcatgctccac
tccggctcccgcaacatcggcaaggaactcgccgagcatcacatcggcgtcgcccagaag
ctcccgcacaaccagggcctggtcgaccgggacttggcggtcttcgtcgcggacaccccg
cagatggcggcctaccgcaacgacctgttctgggcgcaggagtacgccaagtacaaccgc
acgctgatgatggcgctgctgaaggacgtcatccgcaaggagttcaagaaggccaagccg
gccttcgagccggagatctcctgccaccacaactatgtttcgcaggagcggtacgacgga
atggacttgctcgtgacccgcaagggagcgatccgggccggctcgggtgagtacgggatc
atcccgggctccatgggtacggggtcgtacatcgtgaagggtctcggcaacgagaaggcc
ttcaactccgcctcgcacggcgcgggtcggcggatgagccgcaacgcggcgaagaagcgt
ttctccacgaaggacctggaggagcagacccggggcgtggagtgccgcaaggactccggc
gtcgtggacgagatcccgggcgcctacaagtcgatcgaccaggtcatcgaccagcagcgg
gacctggtgcaggtcgtggccaagctgaagcaggtcgtctgtgtgaagggctga
DBGET
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