Streptomyces fodineus: BFF78_21960
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Entry
BFF78_21960 CDS
T05140
Name
(GenBank) RNA polymerase subunit sigma
KO
K03090
RNA polymerase sigma-B factor
Organism
spun
Streptomyces fodineus
Brite
KEGG Orthology (KO) [BR:
spun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spun03021
]
BFF78_21960
Transcription machinery [BR:
spun03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BFF78_21960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_23
GerE
HTH_Crp_2
MarR_2
NirdL-like_HTH
MarR
HTH_3
DUF134
DUF7343
HTH_5
DUF4423
Motif
Other DBs
NCBI-ProteinID:
AOR33382
UniProt:
A0A1D7YCV0
LinkDB
All DBs
Position
complement(5189421..5190269)
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AA seq
282 aa
AA seq
DB search
MTVSASTAPPQDEAAAPAPAPAPAPPEKRRGADTRALTQVLFGELQQLTPGTPEHNRVRG
ALIEANLPLVRYAAARFRSRNEPMEDVVQVGTIGLINAIDRFDPERGVQFPTFAMPTVVG
EIKRYFRDNVRTVHVPRRLHELWVQVNSATEDLTTLYGRSPSTTEIAERLRISEEEVLSC
IEAGRSYHATSLEAAQEGDGLPGLLDRIGYEDPALDGVEHRDLIRHLLVQLPEREQRILL
LRYYSNLTQSQISAELGVSQMHVSRLLARSFQRLRSANRIDA
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgtgtcggccagtactgcgccgccccaggacgaggcggcggctcctgcccccgca
cccgctcccgcgccccccgagaagcggcgcggcgccgacacccgagccctcacccaggtg
ctcttcggagagctgcagcagctgacgccgggcaccccggagcacaaccgggtgcgcggg
gcgctgatcgaggcgaacctcccgctcgtacgctacgcggccgcccgcttccgctcccgc
aacgagccgatggaggacgtggtccaggtcggcaccatcggcctgatcaacgccatcgac
cggttcgacccggagcggggcgtgcagttcccgaccttcgcgatgccgaccgtggtcggc
gagatcaaacggtacttccgggacaacgtccgcacggtccacgtaccgcgccggctgcac
gagctgtgggtgcaggtcaacagcgcgaccgaggacctgaccacgctctacggccgttcc
ccgtccaccaccgagatcgccgaacggctgcggatcagcgaggaggaggtgctcagctgc
atcgaggcgggacggtcgtaccacgccacctcactggaggccgcgcaggagggcgacgga
ctgcccggcctgctggaccgcatcggctacgaggacccggccctggacggcgtggagcac
cgcgacctgatccggcatctgctcgtccaactccccgaacgcgaacagagaatccttctc
ctgcgctactacagcaatctcacccagtctcagatcagcgcggaactcggcgtctcccag
atgcatgtctcccggctcctcgcccgcagcttccagcggctgcgctcggcgaatcgcatc
gacgcatag
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