Streptomyces fodineus: BFF78_22370
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Entry
BFF78_22370 CDS
T05140
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
spun
Streptomyces fodineus
Brite
KEGG Orthology (KO) [BR:
spun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spun03019
]
BFF78_22370
Enzymes [BR:
spun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BFF78_22370
Messenger RNA biogenesis [BR:
spun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BFF78_22370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
SLFN-g3_helicase
AAA_30
NACHT
T2SSE
AAA_16
NTPase_1
ResIII
TsaE
MetJ
SRP54
Motif
Other DBs
NCBI-ProteinID:
AOR33445
UniProt:
A0A1D7YCU8
LinkDB
All DBs
Position
complement(5264121..5268065)
Genome browser
AA seq
1314 aa
AA seq
DB search
MSTHPAPVLGTLAPRLTELSLRDAHRLGRRLEGARKIRTPEARAAVLAEIEGEIGKAEAR
IGERRARVPAVTYPEQLPVSQKKDVIAAAIRDHQVVIVAGETGSGKTTQIPKICMELGRG
VRGMIGHTQPRRIAARTVAERVAEELRTPLGEAVGWKVRFTDQVNPDATFIKLMTDGILL
AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR
HFGEAPIIEVSGRTYPVEVRYRPLLEEDAEDADRDQITAIIDAVEELQGEGQGDILVFLS
GEREIRDTADALERKKYRFTEILPLYARLSHAEQHRVFQPHTGRRIVLATNVAETSLTVP
GIKYVIDPGFARISRYSHRTKVQRLPIEPISQASANQRKGRCGRTSDGICIRLYSEDDFL
ARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELHALDPA
QKDPRKRLTDTGRKLAQLPVDPRLARMVLEADRNDCVREVMVIAAALSIQDPRERPADKQ
TQADQQHARFKDETSDFLAYLNLWRYIREQQKERGSSSFRRMCKQEYLNFLRIREWQDIY
TQLRTVAKQMGIHLSEEDAPADRVHVSLLAGLLSHIGMKDVREGNKNEYLGARNAKFAIF
PGSALFKKQPKFVMSAELVETSRLWARVNARIEPEWVEPLAGHLLKRTYSEPHWEKDQAA
VMAYEKVTLYGVPIVAQRKVNYGRIDPETSRELFIRNALVEGDWRTHHKFFADNRKLLSE
VEELEHRARRRDIVVDDETLFDFYDQRVPEHVVSGAHFDSWWKHKRHEQPDFLDFEREML
IRESAEAVTKADYPDSWRQGQLKFRVTYQFEPGADADGVTVHIPLQVLNQVTDEGFDWQI
PGLRAEVVTELIRSLPKPVRRHYVPAPNYAKAFLDKAVPLQEPLTVTMARELKRMVGVPF
EADDFDWSKVPDHLKITFRIVDERRRKLAEDKDLQALKLTLKPKARKALSQAAAATASRE
GGESLERSGLTDWTIGTLTRVFETRRAGQPVKAYPALVDDGDTVSVRLFDTEAEQAEAMW
KGTRRLILRNIPVNPAKFASEKLTNAQKLALSANPHGSVQALFDDCAMAAADKLIGDFGG
PVWDEESYRKLYDKVRAEIVDTTVRAVAQVQQVLAAWQACERRLKAVRSPALLANLTDVR
KQLDALVKPGFVTWAGIRRLPDLMRYLVAADRRLQQMPTGVQRDTTRMEKVHEMQDEYAW
LLEQLPQGRPVPSSVLDIRWMIEELRVSYFAHALGTAYPVSDKRIVKAIDAAVP
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcatcccgcccccgtcctcggcaccctcgctccccgcctgaccgaattgtcg
ctgcgcgacgcgcaccggctcggccgacggctcgagggcgcgcgcaagatccgtacgccg
gaggcccgcgccgccgtcctcgccgagatcgagggcgagatcggcaaggccgaggcacgg
atcggtgagcggcgtgcccgtgtgcccgccgtcacctaccccgagcagctgccggtcagc
cagaagaaggatgtgatcgcggcggccatccgcgatcaccaggtcgtcatcgtcgccggt
gagaccggttccggcaagaccacgcagatcccgaagatctgtatggagctcgggcgtggc
gtacgcggcatgatcgggcacacgcagccccggcgtatcgccgcccggaccgtcgccgag
cgggtggcggaggagctgaggacgcccctcggcgaggccgtcggctggaaagtgcggttc
accgaccaggtgaacccggacgccaccttcatcaagctgatgacggacggcatcctgctc
gccgagatccagaccgaccgtgagctgcgcgcctacgacacgatcatcatcgacgaggcc
catgagcggtcgctgaacatcgacttcctgctcgggtacctcgcccagctgctgccgaag
cggccggacctcaaggtcgtcatcacctccgcgaccatcgaccccgagcgcttctcccgg
cacttcggcgaggccccgatcatcgaggtcagcgggcggacataccccgtcgaggtccgc
taccggccgctgctggaggaggacgccgaggacgccgaccgggaccagatcaccgccatc
atcgacgccgtcgaggagctccagggcgagggccagggcgacatcctcgtcttcctctcc
ggcgagcgggagatccgggacaccgccgacgcgctggagcggaagaagtacaggttcacc
gagatcctgcccctgtacgcccggctctcgcacgccgagcagcaccgggtcttccagccg
cacaccgggcgcaggatcgttctggcgaccaacgtcgccgagacgtccctcaccgtcccc
gggatcaagtacgtcatcgaccccggcttcgcccggatcagccgctacagccaccgcacc
aaggtccagcggctgcccatcgagccgatctcccaggccagcgccaaccagcgcaagggc
cgttgcggtcgtacgtccgacggcatctgcatccggctgtacagcgaggacgacttcctc
gcccggccggagttcacggacgccgagatcctgcgtacgaacctggcctccgtcatcctc
cagatgaccgccgccggcctcggcgacatcgagaagttccccttcatcgacccgccggac
caccgcaacatccgcgacggcgtacagctgctgcaggagctgcacgcgctggaccccgcc
cagaaggacccccgcaagcggctcaccgacaccggccgcaagctggcccagctgcccgtc
gacccgcgcctggcccggatggtcctggaggcggaccggaacgactgtgtccgcgaggtc
atggtcatcgccgcagcgctgtccatccaggacccgcgcgagcgcccggccgacaagcag
acccaggccgaccagcagcacgcccgcttcaaggacgagaccagcgacttcctcgcctac
ctcaacctgtggcggtacatccgcgagcagcagaaggagcggggctccagctccttccgc
cggatgtgcaagcaggagtacctgaacttcctgcgcattcgcgaatggcaggacatctac
acccagctgcgcacggtcgccaagcagatgggcatccacctcagcgaggaggacgccccc
gccgaccgcgtccacgtctcgctcctggccggcctgctctcccacatcgggatgaaggac
gtacgggagggcaacaagaacgagtacctgggcgcccgcaacgccaagttcgcgatcttc
ccgggctcggcgctgttcaagaagcagcccaagttcgtgatgtcggccgagctggtggaa
acctccaggctctgggcgcgggtcaacgccaggatcgagccggagtgggtcgagccgctc
gccgggcacctgctgaagcggacgtacagcgaaccgcactgggagaaggaccaggcggcc
gtgatggcgtacgagaaggtcacgctgtacggcgtcccgatcgtcgcccagcgcaaggtg
aactacggccggatcgacccggagacgagccgcgagcttttcatccgcaacgcgctggtc
gagggcgactggcgcacgcaccacaagttcttcgccgacaaccgcaaactcctcagcgag
gtcgaggagttggagcaccgcgcgcggcgccgggacatcgtggtcgacgacgagacgctg
ttcgacttctacgaccagcgggtgcccgagcacgtcgtgtccggggcgcacttcgactcc
tggtggaagcacaagcggcacgagcagccggacttcctggacttcgagcgggagatgctc
atccgggagtcggcggaggcggtcaccaaggccgactatccggactcctggcggcagggg
cagctgaagttccgggtgacgtaccagttcgagccgggcgcggacgccgacggcgtgacg
gtccacatcccgctccaggtcctcaaccaggtcacggacgagggcttcgactggcagatc
ccgggcctgcgtgcggaggtggtgacggagctgatccgttccctccccaagcccgtccgc
cgtcactacgtacccgcgccgaactacgcgaaggcgttcctggacaaggcggtgcccctg
caggagccgctgacggtgacgatggcgcgcgagctgaagcggatggtcggcgtccccttc
gaggccgacgacttcgactggtccaaggtccccgaccacctcaagatcaccttccggatc
gtcgacgagcggcggcggaagctggccgaggacaaggaccttcaggcgctgaagctcacg
ctgaagccgaaggcccgcaaggccctgtcgcaggcggcggcagcgaccgcctcccgcgag
ggcggggagtccctggagcgctcgggcctgaccgactggacgatcggcacgctcacccgg
gtcttcgagacccgccgggccggccagccggtcaaggcgtacccggcgctggtggacgac
ggcgacacggtctcggtccgcctcttcgacacggaggccgagcaggccgaggccatgtgg
aagggcacccggcggctgatcctgcggaacatcccggtgaacccggcgaagttcgcgtcc
gagaagctgacgaacgcccagaagctcgccctctccgccaacccgcacggctcggtccag
gccctgttcgacgactgcgcgatggcggcggcggacaagctgatcggggacttcggcggg
ccggtgtgggacgaggagtcgtaccggaagctgtacgacaaggtgcgcgcggagatcgtc
gacacgacggtccgcgcggtcgcccaggtgcagcaggtcctcgcggcctggcaggcctgt
gaacgccgtctgaaggccgtgcgcagccccgcgctgctggcgaacctgacggacgtacgc
aagcagctggacgccctggtgaagccgggattcgtcacctgggcgggcatacgccgcctg
cccgacctgatgcgctatctggtggccgcggaccggcgtctgcagcagatgccgacgggc
gtccagcgggacaccacgcgcatggagaaggtccacgagatgcaggacgagtacgcctgg
ctcctggaacagctcccccagggccggccggtcccgtcctcggtcctggacatccgctgg
atgatcgaggagctgagggtcagctacttcgcccatgccctcggcaccgcctaccccgtc
tccgacaagcggatcgtgaaggcgatcgacgcggcggtgccgtaa
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