Streptomyces fodineus: BFF78_37280
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Entry
BFF78_37280 CDS
T05140
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
spun
Streptomyces fodineus
Pathway
spun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BFF78_37280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spun03019
]
BFF78_37280
Messenger RNA biogenesis [BR:
spun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BFF78_37280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
YicC-like_C
Motif
Other DBs
NCBI-ProteinID:
AOR35961
UniProt:
A0A1D7YK82
LinkDB
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Position
complement(8589589..8591274)
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AA seq
561 aa
AA seq
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MSHPHPELKAAPPLPEGGLRVIALGGLGEIGRNMTVFEHAGKLLIVDCGVLFPEETQPGV
DVILPDFTSIRDRLDDIVAVVLTHGHEDHIGGVPYLLRERSDIPVVGSKLTLAFLEAKLK
EHGIRPRTVPVREGDRRGFGPFDCEFVAVNHSIPDSLAVAIRTRAGMVLHTGDFKMDQFP
LDDRITDLRAFARLGEEGVDLFLTDSTNAEVPGFTTSERELNPAIEQVMRTAPRRVIVSS
FASHVHRIQQVLDAAHQHGRKVAFVGRSMVRNMGIARDLGYLKVPSGLVVSTKELEKLPD
HKITLVCTGSQGEPMAALSRMANRDHMIRIGKGDTVLLASSLIPGNENAIYRVINGLTRW
GAHVVHKGNAKVHVSGHASAGELVYCYNIVKPRNVMPVHGEWRHLRANGDLAIRTGVDPE
RVVLAEDGVVVDLVDGRASITGKVPAGNVYVDGMEVGGATEASLKDRLTLAAEGVVTVVA
IVDADTGALAEAPDFLARGFVHDDATFEPVIPVIEKTLATAAEEGVGDAHQLEQLVARAV
ANWAFRTHRRKPLIIPVIIDA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatccgcaccccgagctgaaagccgccccaccccttcccgaaggagggctgcgg
gtcatcgccctgggcggcctgggtgagatcggccgcaacatgaccgtcttcgagcacgcg
ggcaagctcctgatcgtcgactgcggcgtgctgttccccgaggagacccagcccggcgtg
gacgtgatcctgccggacttcacctcgatccgggaccggctggacgacatcgtggccgtg
gtcctcacccacggccacgaggaccacatcggcggcgtgccgtacctgctgcgcgagcgg
tccgacattcccgtcgtcggctccaagctgacgctggccttcctggaggccaagctcaag
gaacacggaatccggccgcgcacggtgccggtgcgggagggcgaccggcgtggcttcggg
cccttcgactgcgagttcgtggcggtcaaccactccatccccgacagcctcgcggtcgct
atccgcaccagggccgggatggtgctgcacaccggcgacttcaagatggaccagttccct
ctcgacgaccgcatcaccgatctgcgcgccttcgcccgcctcggcgaggagggcgtggac
ctgttcctcaccgactccaccaacgccgaagtgcccggcttcaccacctccgagcgagag
ctgaacccggcgatcgagcaggtgatgcgcaccgcgccgcgccgggtcatcgtctccagc
ttcgccagccacgtgcaccgcatccagcaggtcctggacgccgcccaccagcacggccgc
aaggtcgccttcgtcggccggtcgatggtccgcaacatgggcatcgcccgtgacctgggc
tatctgaaggtcccctccggtctggtcgtgagcacgaaggagctggaaaagctcccggac
cacaagatcactctggtgtgcaccggctcccagggcgaaccgatggccgcgctgtcacgg
atggccaaccgcgaccacatgatccgcatcggcaagggcgacaccgtcctgctcgccagc
tccctcatccccggcaacgagaacgccatctaccgggtgatcaacggactcacccggtgg
ggcgcccacgtggtccacaagggcaacgccaaggtgcacgtctccgggcacgccagcgcc
ggcgaactcgtctactgctacaacatcgtcaaaccccgcaacgtcatgcccgtgcacggc
gaatggcgccacctgcgagccaacggcgacctcgccatccgtaccggtgtcgaccccgaa
cgggtcgtcctcgccgaggacggcgtcgtcgtcgacctggtcgacgggcgcgcgtccatc
accggcaaggtccccgccggcaacgtctacgtggacggcatggaagtcggcggcgccacc
gaagcgtccctcaaggaccgcctcaccctcgccgccgaaggcgtggtcacagtggtggcg
atcgtcgacgcagacaccggcgccctcgccgaggcccccgacttcctggcccggggcttc
gtccacgacgacgccaccttcgagccggtcatccccgtcatcgagaagaccctggccacc
gcggccgaggaaggcgtcggggacgcgcaccaactcgaacaactcgtcgcccgcgccgtg
gcgaactgggcgttccgcacccaccgccgcaagcccctcatcatccccgtcatcatcgac
gcctga
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