Streptomyces fodineus: BFF78_38200
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Entry
BFF78_38200 CDS
T05140
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
spun
Streptomyces fodineus
Brite
KEGG Orthology (KO) [BR:
spun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spun03016
]
BFF78_38200
Enzymes [BR:
spun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BFF78_38200
Transfer RNA biogenesis [BR:
spun03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BFF78_38200
Prokaryotic type
tRNA splicing ligases
BFF78_38200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AOR36113
UniProt:
A0A1D7YKI2
LinkDB
All DBs
Position
8818164..8819576
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AA seq
470 aa
AA seq
DB search
MELVEERSFRYRIEPRADMRVPGVVFATRELLADAEQSLEQVVHVATLPGIVAASYAMPD
IHWGYGFPIGGVAATDVDAGGVISPGGVGFDISCGVRLLAADCDGDTFRPALTAVMDGLD
RAIPRGAGPGGVWRPDGPGELERLLAGGSRYAVEQGHGEERDLLRCEDGGAVADADVTQV
GQRARERGLGQVGSLGSANHFLEVQQVAEVYDGPAAAAFGIGPGQVCVMIHCGSRGLGHQ
ICTDHVRLMDRAMARYGITVPDRQLACTPVDSPEGRAYLGAMAAAANYGRANRQLLSDAA
RGVFRRAAGARLSLVYDVSHNLAKIETHPVDGERRRLCVHRKGATRAFPPGHPELPEDIA
EFGQPVLIPGTLGTASYVLAGVSGGDAFHSTCHGAGRTMSRHQAARSITGSELRARLRHA
GIAARPKSWRGLTEETPEAYKDVDAVVAASEGAGLCRKVARLVPLGVVKG
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggagttggtcgaggaacgttccttccgctaccgcatcgagccgcgggcggacatgcgg
gtacccggtgtcgtgttcgccaccagggagctgctcgccgacgccgagcagtccctggag
caggtcgtgcacgtggccacgctgcccgggatcgtcgccgcctcgtacgcgatgccggac
atccactgggggtacggctttcccatcggcggtgtcgcggccaccgacgtggacgccggc
ggggtcatctcgccgggcggtgtcggcttcgacatctcctgcggggtgcggctgctggcc
gccgactgcgacggcgacacgttccggcccgcgctgaccgcggtgatggacggcctggac
cgggcgatcccacggggagccggtcccggcggtgtctggcggccggacggcccgggcgag
ctggagcggctgctggccggcggctcccgctacgccgtggaacagggccacggggaggaa
cgcgatctgctgcgctgcgaggacggcggcgcggtcgccgacgcggatgtgacgcaggtc
gggcagcgggcccgggagcggggcctcggccaggtcggcagcctgggctccgccaaccac
ttcctggaggtgcagcaggtcgccgaggtgtacgacggaccggccgcggccgccttcggg
atcgggccgggccaggtgtgcgtgatgatccactgcgggtcgcgtgggctcgggcaccag
atctgcaccgaccatgtgcggctcatggaccgcgccatggcccgctacggcatcaccgtg
cccgaccggcagctggcctgcaccccggtcgactcccccgagggccgggcgtacctcggg
gcgatggccgcggcggccaactacggccgggcgaaccggcaattgctgtccgacgcggcg
cgtggcgtcttccggcgcgccgccggtgcccggctgtcactggtgtacgacgtctcccac
aacctcgccaagatcgagacccacccggtggacggcgagcggcggcggctgtgcgtgcac
cgcaagggcgccacccgcgccttcccgcccggacatcccgaactgcccgaggacatcgcc
gagttcgggcagccggtgctgatccccggcaccctcgggacggcgtcctatgtgctggcc
ggcgtgtccgggggcgacgcgttccactccacctgccatggtgccggccgcaccatgagc
cgacatcaggcggcccgcagcatcaccggcagtgagctgcgggcccggctgcgccacgcc
ggcatcgccgcacggccgaagtcctggcgcggcctcacggaggagactccggaggcctac
aaggacgtggacgccgtggtcgccgcgagcgagggtgcggggctgtgccggaaggtcgcc
cggctggtgccgctcggagtggtgaaggggtga
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