Streptomyces fodineus: BFF78_38360
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Entry
BFF78_38360 CDS
T05140
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
spun
Streptomyces fodineus
Pathway
spun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BFF78_38360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spun03021
]
BFF78_38360
03019 Messenger RNA biogenesis [BR:
spun03019
]
BFF78_38360
Transcription machinery [BR:
spun03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BFF78_38360
Messenger RNA biogenesis [BR:
spun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BFF78_38360
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
ATPase_2
Spore_III_AA
DUF3086
NACHT
AAA
Motif
Other DBs
NCBI-ProteinID:
AOR36142
UniProt:
A0A1D7YKT8
LinkDB
All DBs
Position
complement(8847668..8848816)
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AA seq
382 aa
AA seq
DB search
MTTTLEHPPVVQQPPATRLVTGVLDIDAQGKGQLRAAGLLPSPTDPQVPPALIRRHGLRK
GDLVEGVRGDRRALTEVTRVDGRDPADLRGRRHFRDLTPLHPHDRIRLEHPGAGLAGRVT
DLFAPVGKGQRGLIVAPPKSGKTVLLQQVAAAVAGNHPECRLMVLLLDERPEEVTEMRRS
VRGEVYASTFDRAAKEHIALAELVVERAKRRVEAGEDVVILLDSLTRLCRAHNNASAAGG
RTLSGGVDAGALLGPKRFFGAARQAEEGGSLTILATVLVDTGSRADGYYFEELKSTGNME
LRLDREAAARRLFPAVDLDASGTRREELLLAPDELTAVHGLRRVLRSREGAPSGLETLLE
RLRSTPGNAAFLRQIRPTLPAG
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccacactcgaacaccctcccgtggtccagcagcccccggccacccggctcgtc
accggtgtcctcgacatcgacgcgcaggggaaggggcagttgcgggccgcgggcctgctc
ccctcccccaccgatcctcaggttccgccggccctgatccggcgccatgggctgcgcaag
ggtgacctcgtcgaaggcgtccggggtgaccggcgcgccctcaccgaggtcacccgcgtc
gacggacgcgacccggcggacctgcgcggccggcgccacttccgcgatctgaccccgctc
cacccacacgaccgcatccgcctcgagcaccccggggccggactggccgggcgcgtcacc
gatctcttcgcgcctgtcggcaagggccagcgcggactcatcgtggccccgccgaagagc
ggcaagacggtgctgctccagcaggtcgcggccgccgtggccggcaaccaccccgagtgc
cgcttgatggtcctgctgctggacgagcggcccgaggaagtcaccgagatgcgccgctcg
gtgcgcggcgaggtgtacgcctccaccttcgaccgggcggccaaggaacacatcgccctc
gccgagctcgtcgtcgagcgggccaagcgccgggtggaggccggcgaggacgtcgtgatc
ctgctggactcgctgacccggctgtgccgggcgcacaacaacgcctccgccgccggtggc
cgcaccctgagcggcggtgtcgacgcgggcgctctgctcggccccaagcggttcttcggc
gccgcccggcaggccgaggagggcggctcgctgaccatcctcgccaccgtcctggtggac
accggctcccgcgccgacggctactacttcgaggagttgaagagcaccggcaacatggag
ctgcgcctggaccgggaagccgccgcccggcgtctcttccccgccgtcgatctcgacgcc
tccggcacccgccgcgaggaactcctcctggcgccggacgagttgacggccgtacacggc
ctgcgtcgcgtgctgcgctcccgcgagggcgctccgtccggcctggagaccctgctggag
cggctgcgctccacccctggcaacgccgcgttcctgcggcagatccggccaactctgccc
gccggctga
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