Sphingopyxis sp. USTB-05: KEC45_00860
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Entry
KEC45_00860 CDS
T10625
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
spus Sphingopyxis sp. USTB-05
Brite
KEGG Orthology (KO) [BR:
spus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spus03032
]
KEC45_00860
03400 DNA repair and recombination proteins [BR:
spus03400
]
KEC45_00860
Enzymes [BR:
spus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KEC45_00860
DNA replication proteins [BR:
spus03032
]
Prokaryotic type
DNA Topoisomerases
KEC45_00860
DNA repair and recombination proteins [BR:
spus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KEC45_00860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
USI77504
LinkDB
All DBs
Position
complement(179784..180794)
Genome browser
AA seq
336 aa
AA seq
DB search
MPAPRLIHVDDSLPGISRTRSGVGWLYRDAKGKVIRDRDEIDRLNAIALPPAYEDAWFCP
APNGHILATGYDARGRKQYRYHPEFRIAREADKYDRCAAFGHALPLLRARLEDDLNRRTL
CSERVVAAVVRLLDLAALRVGNEQYVAANKSFGATTLRQRHAKLSGKTLRLKYIAKGGAK
REVTISDRSLTTLVRRLQDLPGQNLFQYDDGDGVCAVASEDVNAYIREAMGDEFSAKHFR
TWTASVEAFAFLYDAPQPPTLKAMLEHVADRLGNTPAIARKAYVHPAMLAAAQAREDFAA
AVGKLPRAARYLSRYERGFLTYLEQAPAAAVLLQSA
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccccgcgcctgatccatgtcgacgacagcctgcccggcatcagccgcacgcgc
tcgggcgtcggttggctttatcgcgacgccaagggaaaggtcatccgcgaccgcgacgag
atcgaccgcctcaacgcgatcgcgctgccgccggcctatgaggatgcgtggttctgcccc
gcccccaacggccatatcctcgcgaccggatacgacgcacgcgggcgcaagcaatatcgc
tatcatcccgaatttcgcatcgcgcgtgaggccgacaaatatgaccgctgcgccgccttc
ggccatgcgctgccgttgctgcgcgcgcgcctcgaagacgatctgaatcgccggacgcta
tgttccgaacgcgtcgtcgcggcggtggtgcggttgctggaccttgccgcgctgcgcgtc
gggaacgaacaatatgtcgcggcgaacaaaagcttcggcgcaacgacgctgcgccagcgc
catgccaaactctcgggcaagacgctccgcctcaaatatatcgccaaaggcggcgccaag
cgtgaggtgacgatcagcgaccgcagcctgacgacgctcgtccgccggcttcaggacctg
cccggtcagaatctcttccaatatgacgatggcgacggcgtctgcgccgtcgcctccgaa
gatgtgaacgcctatattcgcgaagcgatgggcgacgaattcagcgccaagcatttccgc
acatggaccgcgagcgtcgaggccttcgccttcctctacgacgcgccccagccgccgacg
ttgaaagcgatgctcgaacatgtcgccgatcgcctcggcaacacacccgccatcgcgcgc
aaggcctatgtccaccccgcgatgcttgctgcggcgcaggcgcgtgaggactttgccgct
gcggtcggcaagctcccgcgcgcggcccgctatctttcgcgttacgaacgcggatttttg
acctatctggagcaggcacccgcggccgcggtgctgcttcaatccgcctga
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