Sphingopyxis sp. USTB-05: KEC45_04325
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Entry
KEC45_04325 CDS
T10625
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
spus Sphingopyxis sp. USTB-05
Brite
KEGG Orthology (KO) [BR:
spus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spus03009
]
KEC45_04325 (rimO)
Enzymes [BR:
spus01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
KEC45_04325 (rimO)
Ribosome biogenesis [BR:
spus03009
]
Prokaryotic type
ribosomal protein modification factors
KEC45_04325 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
TRAM
Motif
Other DBs
NCBI-ProteinID:
USI78139
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Position
complement(993445..994812)
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AA seq
455 aa
AA seq
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MTVKTLPTQPKVGMVSLGCPKALVDSERILTKLRADGYGLSPDYAGADVVLVNTCGFLDS
AKEESLEAIGEAMAENGRVIVTGCMGNEAEVIRARFPNVLAVTGAHQYEQVVDAVHDAAP
PTQGPFIDLVPEGGLKLTPRHYSYLKISEGCNHSCSFCIIPDLRGKLVSRRIDAVLREAE
KLVAAGTKELLVISQDTSAYGVDIRHDPRQWHGREVRAHMTDLARELGQLKTSEGHAPWV
RLHYVYPYPHVDAVIPLMAEGLLTPYLDIPFQHASPSVLKRMKRPANEAKVLERLKSWRQ
IAPDISIRSSFVVGFPGETEADFQYLLDWLDEAQLDRVGAFRFEPVAGAQANALDDQVPE
EVKEERYQRIMAKTAAISAAKLEAKIGRTLPVIIDEVGEADEEGSIGATGRSQADAPEID
GHVYLRDVAASLKAGDIVDVAIEDADEHDLFGVVV
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgacagtcaaaaccctccccacccagccgaaggtcggcatggtttcgctcggctgcccc
aaggcattggtcgacagcgagcggattctgaccaagctgcgcgccgacggctacggcctg
tcgcccgactatgcgggcgccgacgtcgtgctcgtcaacacctgcggcttcctcgactcg
gcgaaggaagagagcctcgaggcgatcggtgaagcaatggcggagaatggccgcgtcatc
gttaccggctgtatggggaacgaggccgaggttattcgcgcgcgcttccccaatgtgctc
gcggttaccggcgcgcatcaatatgagcaggtcgtcgacgctgtccacgacgccgcgccg
ccgacgcaaggccccttcatcgacctcgtcccagagggcgggctgaagctcacgccgcgc
cactacagctatctcaagatttccgaaggctgcaaccatagctgctccttctgcatcatc
cccgatctgcgcggcaaactcgtcagccgccgcatcgacgcggtgctgcgcgaggccgaa
aagcttgtcgccgcggggaccaaggaactgctggtcatcagccaggacacatcggcctat
ggcgtcgacattcgtcacgacccgcgccagtggcacggccgcgaagtccgcgcgcatatg
accgacctcgcgcgcgaactgggacagctcaagaccagcgaaggccatgccccatgggtc
cgcctccattacgtctacccctatccgcacgtcgacgcagtaatcccgctgatggccgaa
gggctgctgactccctatctggacatccctttccagcatgcgagcccgagcgtcctcaag
cgcatgaagcgccccgcgaacgaagcgaaggtgctcgaacggctgaaaagctggcgccag
atcgcccccgacatctcgatccgatcgagcttcgtcgtcggcttcccgggcgagaccgag
gccgatttccaatatcttctcgactggctcgacgaagcgcagctcgaccgcgtcggcgcc
ttccgcttcgaacccgtcgcgggagcgcaagcgaatgcgctcgacgatcaggtgcccgaa
gaggtcaaggaagagcgttaccagcgcatcatggcaaagaccgccgcgatcagcgccgcc
aagctcgaagccaagatcggccgtaccctgcccgtcatcatcgacgaagtcggtgaagcc
gacgaagagggcagcatcggcgccacaggccgctcacaggccgatgcgcccgaaatcgac
ggccatgtctatcttcgcgacgtcgcggcgagcctcaaggccggcgatatcgtcgacgtc
gcgatcgaagacgccgatgagcatgacctgttcggggtcgtcgtctaa
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