Sphingopyxis sp. USTB-05: KEC45_06120
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Entry
KEC45_06120 CDS
T10625
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
spus Sphingopyxis sp. USTB-05
Brite
KEGG Orthology (KO) [BR:
spus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spus03019
]
KEC45_06120 (hrpB)
Enzymes [BR:
spus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KEC45_06120 (hrpB)
Messenger RNA biogenesis [BR:
spus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KEC45_06120 (hrpB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
Cas3-like_C_2
Flavi_DEAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
USI78473
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Position
1378121..1380583
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AA seq
820 aa
AA seq
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MQSLPIDVVLPDIMAALVLKPNAVVVAPPGAGKTTRVAPAILDQPWCKGAVWLLSPRRLA
ARGAAERIAEEMGEAVGGKVGYATRLDSKQSAATRLLVMTPGLFRNRILADPELRGVSAV
LFDEVHERSLDGDFALALAIDAQQGLRDDLRLVAMSATLDGVRFAALLGNAPAVKSEGKI
WPLELRHIGRRAEDRLEASMLAAVRQALVDEVAGDMLAFLPGAADIERTAAAVEEARLPL
VVHRLHGQIDPALQRKALVRDADGRRKLILATSIAETSLTIDGVRIVIDAGLSRRPRFDK
AAGIARLVTERASQASATQRAGRAARQGPGVAYRLWEAAATAGMPPFDPPEIHENDLMPV
VLDCASWGIIDPRQLGWLDPPSPAAISEAKSRLQAIGALADDGRITAHGKALAAIPLPVP
LAHMLLDAARAGEAEMAGRLAVLLTEPGLGGRGVDVEARLSRWRGQRNERSDGAWRLARR
LATIGEKLAAETDSVPTRSIGGWIATAWPDRVARQRAGQRGEYLSVGGRAYRIDPVDPLA
GSEWLAIADAQGHAAGVRILAAAPIEQAEVEALFADRIVQRSASSYDGANDRVDHRRERR
LGAIALTSGQAGRSENSEDDIAVRMAAVRSKGLGLIGWGPASQALRQRASYAGIDALSTG
ALADSLELWLEPLLSGCRGLRDIGDRKLTDALMATLDWPARQLLEKHAPADYATPVGGRH
PIDYGADGGPTVSLRVQELFGLARHPTIGDPPVPLVLALTSPAHRPIQTTRDLVSFWSGS
WHDVAREMRGRYPKHNWPDDPANARPSLMTKAAQARRDAQ
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcgcttccgatcgatgtcgtgctgcccgatatcatggcggccctggtgctaaag
cccaacgccgtcgtcgtggcaccgccgggggctggcaagacgacgcgcgtggcgcccgcg
atactcgaccaaccgtggtgcaagggcgcggtgtggttgctctcgccccgccgccttgcc
gcacgtggcgcggccgagcgcatcgccgaggaaatgggcgaagcggttggcggcaaggtt
ggctatgccacgcggctcgacagcaagcagtcggcggcgacgcggctgctggtgatgact
cccggcctgttccgcaaccgcatcctcgcggatcccgagcttcggggcgtgtcggcagtc
ctcttcgacgaagtccatgaacgcagcctcgacggcgactttgcgctcgcattggcgatc
gatgcgcagcagggtcttcgcgacgatcttcgcctcgttgcgatgtcggcgacgcttgac
ggcgtgcgctttgccgccctccttggcaatgcgccggcggtgaagagcgagggcaagatc
tggccgctcgaactgcgccatatcggtcgccgcgccgaggaccggctggaggcttcgatg
ctcgcggcggtgcggcaggcgctggtcgacgaggttgcgggcgacatgcttgctttcctg
cccggcgccgccgacatcgagcgcactgcagccgcagtcgaagaggcgcgcttgccgctc
gtcgtccatcgcctccacggccagatcgatccggcgctacagcgcaaggcgctcgtccgc
gatgctgatggacggcgcaagttgatcctcgcgacgagcatcgcggaaaccagcctgacg
atcgacggcgtgcgtatcgtgatcgacgccggcctgtcgcggcgtccgcgctttgacaag
gcggcgggcatcgcgcgcctcgtcaccgagcgcgcgagccaggcgtcggcgacgcagcgc
gcgggccgcgccgcgcggcaagggccgggcgttgcctatcgattgtgggaagccgcggcg
accgcaggcatgccgccgttcgatccccctgaaatccacgaaaatgatctgatgcccgtc
gtcctcgattgtgcgagttggggcatcatcgacccgcgccaactgggctggctcgacccc
ccatcgcccgccgccatttcggaagcgaaaagccggcttcaggcgattggggcgctggcc
gacgatggccgcatcaccgcacacggcaaggctctcgccgcgatcccgcttcccgttccg
ctcgcgcacatgctgctcgacgcggcgcgcgcgggggaggcggagatggcggggcggctt
gccgtgctgttgaccgagccgggacttggcgggcgcggcgtcgatgtcgaagcgcggctg
tcgcgttggcgtgggcaacgcaacgaacgctccgacggcgcctggcgtctcgcgcggcgg
ctcgcgaccatcggcgagaagctggcggcagagaccgatagcgttccaacgcgctcgatc
ggcggttggattgcgaccgcgtggcccgaccgcgttgcgcggcagcgagcagggcagcgc
ggcgagtatctcagcgtcggcggacgcgcctatcgcatcgacccggtcgatccgctcgcg
ggcagcgaatggctcgcgatcgctgacgcgcagggccatgccgcgggggtgcgcatcctg
gccgcggcgccaatcgaacaggccgaggtcgaggcactcttcgccgaccgcatcgtccag
cgttcggcaagcagttatgacggcgctaacgaccgcgtcgatcatcgccgcgaacggcgg
cttggtgcgatcgcactgacgagcgggcaggccgggcgcagcgaaaattcggaggacgat
atcgcggtacgcatggctgcggtgcgcagcaagggactgggactgatcggttggggaccg
gcgtcgcaggcgctgcgccagcgcgcttcctatgcggggatcgacgcgctctcgaccggc
gcgctcgccgatagtctcgaactctggctggagccgttgctttcgggatgccggggcctt
cgcgatatcggcgatcgcaagctgaccgatgcgttgatggcgaccctcgactggccggcg
cggcagttgctcgaaaagcacgcgcccgccgactatgcgacaccggtcggcggccggcat
ccgatcgactatggcgccgacggtgggccgacggtcagccttcgcgtgcaggaattgttc
gggctggcccgccatccgacgatcggcgatccgccggtgccgctggtgctcgccctgacc
tctcccgcgcatcgaccgattcagacgacgcgcgacctcgtatccttctggagcggtagc
tggcatgatgtggcgcgcgagatgcgcgggcgctatcccaagcataattggcccgacgat
ccggcaaatgcgcggccgagcctgatgaccaaagcggcacaggcgcgccgcgatgcgcaa
tag
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