Sphingopyxis sp. USTB-05: KEC45_06590
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Entry
KEC45_06590 CDS
T10625
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spus Sphingopyxis sp. USTB-05
Pathway
spus03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KEC45_06590 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spus03400
]
KEC45_06590 (mfd)
Enzymes [BR:
spus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KEC45_06590 (mfd)
DNA repair and recombination proteins [BR:
spus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KEC45_06590 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
USI78562
LinkDB
All DBs
Position
complement(1481016..1484513)
Genome browser
AA seq
1165 aa
AA seq
DB search
MTLSAADIFAAIGSASAPLTLARAADGFLPLLLADLARASDKRLVYVATDDAAMQAIADA
APFFAPDLIVHRFPAWDCLPYDRAGPSMRVSADRLATLSALQLPAKRGELILTTVAAITQ
RTLTPFRIRQLATTLAPGQRIDRDALAELLVSNGFSRVDTVADQGEFAVRGGILDLFPAG
EENGLRVDFFGDEIESIRRFDPADQRSLGPAKALQLLPASETLLDEATIKRFRSSYRDLF
GAQATGDPLYQAVSDGRRQAGMDHWLPLFEERLATLFDHIDPAAPVLRGHRTEATGETRF
AAIADYHANRVAAERESPGSYRPLAPETLYLTNSEWAEASSGRPVHIVTPFDVPPSATVI
DLETFAARDFTPERTADENVYTKVADHLSDERRKGRRTIIASYSGGARERLSGLLRDHGV
TSLAPADSWQDALGTASSESGGATAMVVLPLDHGFASDAISLLTEQDILGERLVRRQKRR
KSADAFLAELATLSVGDLVVHLDHGIGRYEGLTQIPVGSSPHDCVALTYAGGDKLYVPVE
NLDVLSRYGGESDGVGLDKLGGEAWQRRKARMKERIREIAGELLATAAQRALRSGELLAQ
DAAYPAFADRFPYQETDDQDRAIGDVLADMASGRPMDRLVCGDVGFGKTEVALRAAFVAA
MAGVQVAVVVPTTLLARQHYTNFVERFKGFPVNIGRLSRLVPAGEAQKTRDGLASGQIDI
VVGTHAVIAKSVEFKNLGLVIVDEEQRFGVVHKERLKQLKTDVHVLTLTATPIPRTLQMA
MSGLRELSVIQTPPVDRLAVRTYVAPWDPVVIREALLREHDRGGQSFFVTPRIKDLPDIE
EFLRTRVPEIKYVVAHGQMAPGEVEERMSAFYDRKYDVLVSTTIVESGLDIPSANTLIVH
RADRFGLAQLYQLRGRVGRSKTRAYAYLTTMEGGAITDTAEKRLKLLGDLDTLGAGFQLA
SHDLDIRGAGNLVGDEQSGHIREVGFELYQSMLEEAILVAKAEGMGAAPPREALSPVITV
DAPILIPEDYVPDLPLRMALYRRLNEAVDRPALDAFAAEMIDRFGPLPPETANLIQLMEI
KANAKLAGIAKLDVGTKGALVSFHGDQFANVPGLIAYVERLKGRARIRPDNKLSISGDWV
STGARLNGALQLSKGLGKLARQVAG
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgaccttaagcgccgccgacatttttgccgccatcggatcggcgtcggcgccgctcaca
ctggcgcgcgcggccgacggcttcctgccgctgctgctggccgacctggcgcgggcaagc
gacaagcgcctcgtttatgtagcgaccgacgatgcggcgatgcaggcgattgccgacgcg
gctcccttctttgcgcctgatctgatcgtccaccgattccccgcgtgggattgcttgccc
tatgaccgggcgggaccgtcgatgcgggtcagcgccgaccggctggcgacgctctccgcg
ctgcagcttcccgcaaagcgcggcgagttgatcctgaccaccgtcgccgcaatcacccag
cggacgctgacgccctttcgcatccgccagctcgcgacgacgctcgcgccgggtcaacga
atcgatcgcgacgccctggccgaactgctggtgtcgaacggcttcagccgtgtcgacacc
gtcgccgatcagggcgagttcgcagtacgtggcggcattctcgacctgtttccggctggc
gaggaaaacggcctgcgcgtcgacttctttggggacgagatcgaaagcattcgccgcttc
gaccccgccgaccaacgcagccttggccccgccaaggcgctgcaactgctgcccgccagc
gaaaccctgctcgacgaagccacgatcaaacggttccgttccagctatcgcgatctgttc
ggcgcacaggcgaccggtgacccgctctatcaggcagtcagcgacggtcggcggcaggcc
ggcatggaccactggctgcccttgttcgaggaacggctggcgacgctgttcgatcatatc
gatcccgcggcgccggtgctgcgcggccaccgcaccgaggcgaccggcgaaacgcgcttc
gccgcgatcgccgactatcatgcgaaccgcgtcgccgcagaacgcgaatcgcccggcagc
tatcgcccactggcacccgaaacgctttatctgacgaatagcgaatgggccgaagcgtcg
tccgggcgccctgtccatatcgtaacaccgttcgacgttccgccatccgcaacggtgatc
gacctcgaaaccttcgcagcacgcgatttcacgccggagcgtaccgctgacgagaatgtc
tatacgaaggtcgccgaccatctgagcgatgaacgccgcaagggccggcgcacgatcatc
gccagctattcgggcggcgcacgcgagcgcctttcggggctgctccgcgaccatggcgtc
acctcgcttgcgcccgccgatagctggcaggatgcgctcggcaccgcctcgtcggaaagc
ggcggcgcgacggcaatggtggtgctgccgctcgatcatggcttcgcctccgacgcgatc
agcctgctcaccgaacaggacatcctcggcgaacgtctcgtccgccgccagaaacgccgc
aagagcgccgatgccttcctcgccgaactggcgacgctcagcgtcggcgaccttgtcgtc
catctcgaccacggtatcggccgttatgaggggctgacacaaatcccggtcgggagcagc
ccccacgattgcgtcgcgctgacctacgccggcggcgacaagctctacgtccccgtcgaa
aatctcgacgtcctctcacgctatggcggcgagagcgacggtgttggcctcgacaagctc
ggcggcgaagcctggcaacgtcgcaaggcgcggatgaaggagcgcatccgcgagatcgcg
ggcgaactgctcgcgactgcggcgcagcgcgcgctccgctcgggcgaactactcgcgcag
gatgcggcatatcccgcctttgccgaccgtttcccttatcaggaaaccgacgatcaggac
cgcgcgatcggcgacgtgctcgccgacatggcgtccgggcggccgatggaccggctggtc
tgcggtgacgtcgggttcggcaagaccgaggtcgcgctgcgcgctgctttcgtcgccgct
atggcgggggtacaggtcgccgtggtcgtgccgacgacgctcctcgcgcgtcaacattac
acgaatttcgtcgaacgcttcaaaggcttcccggtcaacatcggccgcctgtcgcgcctc
gtcccggcgggcgaagcacaaaagacgcgcgacggtctcgcgagcgggcagatcgatatc
gtcgtcggcacgcacgccgtcatcgcgaaatcggtcgagttcaagaacctcggcctcgtc
atcgtcgacgaggaacagcgtttcggcgtcgtccacaaggaacggctgaagcagctcaag
accgacgttcatgtgctgaccctcaccgctactccaatcccgcgcacgcttcagatggcg
atgtcgggcctccgcgaactcagcgttatccagacgccgccggtcgaccgtcttgccgtc
cgcacctatgtcgcgccatgggaccccgtcgtgatccgcgaagcgctgctgcgcgaacat
gatcgcggcgggcagagctttttcgttacgccgcggatcaaggacctgcccgacatcgag
gaattcctgcgcacgcgcgtgcccgagatcaaatatgtcgtcgcgcatggacagatggcg
cccggcgaggtcgaggagcggatgagcgccttctatgaccgcaaatatgacgtcctcgtc
tcgacgacgattgtcgaaagcgggctcgatatcccgagcgccaatacgctgatcgtccac
cgagccgatcgcttcggccttgcgcagctctatcagctacgcgggcgcgtcgggcggtcg
aagacgcgcgcctacgcctatcttacgacgatggaaggcggcgcgatcaccgacaccgcc
gaaaaacggctcaagctgcttggcgatctcgatacgctgggtgccggcttccagcttgcg
agccacgacctcgacattcgcggcgcgggcaacctcgtcggcgacgaacagtcggggcat
atccgcgaagtcggcttcgaactctaccaatccatgctcgaagaggcgatcctggtcgcg
aaggccgagggcatgggcgctgcgccgccgcgcgaagcgctctcccccgtcatcacggtc
gacgcgccgatcctgattccagaggattatgtccccgacctgccgctgcgcatggcgctg
tatcgccgcctcaacgaagccgtggatcgcccggcactcgatgcctttgccgccgagatg
atcgaccgtttcggtccgctgccgcccgagaccgcgaacctgatccagcttatggagatc
aaggcgaacgccaagctcgctggaatcgcgaagctcgacgtcggaaccaagggcgcactc
gtgagcttccatggcgaccagttcgccaacgtccccgggctcatcgcctatgtcgaacgg
ctgaaaggtcgtgcgcgtatccgccccgacaacaagctttcgatcagcggcgactgggtg
agcacgggcgcgcgcctcaacggcgcgctgcagctatcgaagggtctggggaagctggcg
cggcaagtggcgggataa
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