Sphingopyxis sp. USTB-05: KEC45_07180
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Entry
KEC45_07180 CDS
T10625
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
spus Sphingopyxis sp. USTB-05
Pathway
spus04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
spus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
KEC45_07180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spus03019
]
KEC45_07180
03009 Ribosome biogenesis [BR:
spus03009
]
KEC45_07180
04131 Membrane trafficking [BR:
spus04131
]
KEC45_07180
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spus04147
]
KEC45_07180
Messenger RNA biogenesis [BR:
spus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
KEC45_07180
Ribosome biogenesis [BR:
spus03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
KEC45_07180
Membrane trafficking [BR:
spus04131
]
SNARE
SNARE associated proteins
Others
KEC45_07180
Autophagy
Aggrephagy
Other aggrephagy associated proteins
KEC45_07180
Exosome [BR:
spus04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
KEC45_07180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_33
AAA_22
CDC48_2
AAA_5
AAA_14
AAA_2
TIP49
AAA_lid_PRS2_C
IstB_IS21
Mg_chelatase
nSTAND3
AAA_28
AAA_18
Vps4_C
AAA_7
NPHP3_N
Sigma54_activat
RNA_helicase
AAA_24
AAA_3
AAA_17
DUF815
Zeta_toxin
ABC_tran
AAA_11
AAA_30
ATPase
TsaE
AAA_25
AAA_19
Parvo_NS1
NB-ARC
Sigma54_activ_2
bpMoxR
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
USI78667
LinkDB
All DBs
Position
1604079..1606400
Genome browser
AA seq
773 aa
AA seq
DB search
MADAAVKEKLVKLQVANARAEESGGGIARIPRSAMAELGVTEGDIVQISGKRQTASRVVL
PYAEDEGLEVIRLDGLQRANAGAGAGDMVELSRVEARPAARVVFAPAQENLRLQGSANAL
KRSFFGRPIVAGDTVATAGQQRLESGNMPPQLRQMLNAPAYALAEVRLLVVSASPKGVVF
IDENTEIELLPEYQEPQDARRTDVTYDDLGGLGETIDQLREMVELPLRYPELFRRLGVDP
PRGVLLHGPPGTGKTRLARAVANESEAQFFLINGPEIMGSAYGESEKRLRDIFEQATKAA
PSILFIDEIDSIAPKRGQVQGEAEKRLVAQLLTLMDGLEPRTNLVVIAATNRPDAIDEAL
RRPGRFDREIVIGVPDESGRREILGIHTRGMPLAENVDLAELARTTFGFVGADMAALTRE
AAIEAVRRIMPKLDLAEGTIPAEVLEELRVTREDFNNALKRVQPSAMREVMVQAPKTRWS
DIGGLDAARDKLIEGIELPLKNPEAFRRLGIRAAKGFLLYGPPGTGKTLLAKAAARESDA
NFISIKSSDLLSKWYGESEQQIARLFARARAVAPTIIFIDELDSLVPARGSGTSGEPQVT
ERVVNTILAEMDGIEEMQSVVVIGATNRPNLIDPALLRPGRLDELIYVSVPNAEGRRRIL
EIQTGKMPLAKDVDLAVLAEKSDRFTGADLEDLTRRAGLAALKRSLDSDTVTMEDFETAL
KDTRASVTEAMEKDYEKIQGEIKQAAMSVDPIGFFAPGMLKPVRERKHDDTTD
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
ttggccgacgcagcggtaaaggaaaaactggtgaaactgcaggtggcgaacgcccgtgcc
gaggaaagtggcggcgggatcgcgcgcattccgcgttcggcgatggccgaactgggtgtc
accgaaggcgatatcgtccagattagcggcaagcggcagaccgcctcgcgcgtcgtgctg
ccctatgccgaagatgaggggctcgaagtcattcgcctcgacggtctgcagcgcgccaat
gccggtgccggtgccggcgatatggtcgaattgagccgcgtcgaagcgcgccctgctgcg
cgcgtcgtgttcgcgccggcacaggagaatttgcgcctccagggttcggcgaatgcgttg
aagcgcagcttctttggccgccccatcgtcgcgggtgatacggtcgcgaccgccgggcag
cagcggcttgaatcagggaatatgccgccgcaactccggcagatgctcaacgcgcccgcc
tatgcgctggccgaagtgcgcctgctcgttgtgtcggctagccccaagggcgtcgtgttc
atcgacgagaatacagaaatcgagctgcttccggaatatcaagaaccgcaggacgcgcgt
aggaccgacgtcacctacgatgatcttggtgggttgggcgagacgatcgaccagctgcgc
gagatggtcgagctgccgctgcgctatcccgaactatttcgtcgcctcggcgtagatccg
ccgcgcggcgtgctgctgcacggcccgccgggaaccgggaagacgcggctcgcgcgcgcg
gtcgcgaacgaaagcgaagcgcagttctttctgatcaatggccccgagatcatgggcagc
gcctatggcgagtccgaaaagcggctgcgcgacattttcgagcaggcgacgaaggccgcg
ccatcgattctgttcatcgacgaaatcgattcgattgcgccgaagcgcgggcaggtacag
ggcgaggccgagaagcggctagtggcgcagttgctaacgctgatggacgggctggagccg
cgaaccaacctggtcgtgatcgctgcgaccaatcgccccgatgcgattgacgaggcgctg
cgtcgtcctggccggttcgaccgcgagatcgtgatcggcgttcctgacgaaagcggccgc
cgcgaaattctgggcatccacactcgcggcatgccgctagccgaaaatgtcgatcttgcg
gagcttgcgcgcactacgttcggctttgtcggcgctgacatggcagcgttgacgcgtgaa
gccgcgatcgaggcggtgcggcggatcatgccgaagctcgatcttgctgaagggacgatc
ccggcagaggtgctcgaagagcttcgcgtgacgcgtgaggacttcaacaatgcactgaag
cgcgtccagccctcggcaatgcgcgaagtgatggtgcaggcgccaaagacgcgttggagc
gacatcggcgggctcgacgccgcgcgcgacaagctgatcgaaggaatcgaactgccgctg
aaaaatcccgaggcgttccgccggctcggtatccgcgccgccaagggcttcctgctctat
ggtccgcccgggaccggcaagactttgttggcaaaggcggcggcgcgcgaatccgatgca
aatttcatctcgatcaaatcgtcggacctgctttccaaatggtatggcgagagcgaacag
cagatcgcgcgcctgtttgcccgtgcgcgggcggtggcgcccacgatcatcttcatcgac
gaactcgatagtcttgtgcccgcacgcggcagcgggacgtcgggcgaaccgcaggtgacc
gagcgcgtcgtcaacacgatcctcgccgagatggacgggatcgaggagatgcagtcggtg
gtcgtcatcggcgccaccaaccgtccgaacctcatcgatccggcattgctgcgtcccgga
cggctcgacgaactaatctatgtgtcggtgccgaatgccgaagggcgcaggcggattctt
gaaatccagacgggcaagatgccgctggcgaaggacgtcgaccttgcggttctggccgag
aagtccgatcgtttcaccggcgccgatctggaggatttgacgcgccgcgccggtcttgcc
gcgctcaagcgttcgctcgacagcgatacggtgacgatggaagatttcgaaaccgcgctg
aaggacacccgcgcctcggttaccgaggcgatggagaaggattatgagaagatccagggt
gagatcaaacaggccgcgatgagcgtcgatccgatcggctttttcgcacctggcatgctc
aagcccgttcgcgagcgcaagcacgacgacacgaccgactaa
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