Sphingopyxis sp. USTB-05: KEC45_08640
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Entry
KEC45_08640 CDS
T10625
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spus Sphingopyxis sp. USTB-05
Pathway
spus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KEC45_08640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spus03019
]
KEC45_08640
03016 Transfer RNA biogenesis [BR:
spus03016
]
KEC45_08640
Enzymes [BR:
spus01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KEC45_08640
Messenger RNA biogenesis [BR:
spus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KEC45_08640
Transfer RNA biogenesis [BR:
spus03016
]
Prokaryotic type
tRNA degradation factors
KEC45_08640
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
DUF6211
WHD_RNase_R
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
USI78940
LinkDB
All DBs
Position
complement(1909226..1911556)
Genome browser
AA seq
776 aa
AA seq
DB search
MVRKKQHGLPTPEQILRFIEESKDAVGKREIAKHFALQGNDKIALKALLKDMTDEGLVDL
APGRAFHKHGGLPRVTVLRIVAIEGSNLWAVPDRWEGTGPAPRLRVMEQGRKGALGVGDR
ILARTEERGSGHVAHPMKRLQASAEMVIGVLVEDVGPGGKPMVWLRPADKRARYDFAVAD
KGDADIGDLVRAELTGRGAAIKAKVIDRIGDPFAPRSLSMIAIARHEIPHVFGSETIAEA
EKAAKLPLTPDGREDLRDLPIVAIDPIDARDHDDAVWAIPDDQPGNKDGFRAIVAIADVS
YYVRPDGDLDREARRRGNSVYFPDRVVPMLPETLSAGVCSLKAGEDRAAMACHLIIDKHG
KVTSWRFARALVRLRGNIAYEHAQAAYDADTPREDWDADVLPTLKNLWACWALLAKARAA
RDPLDLDLPERQVILDEQGSIAEIRVRDRLDSMRLIEDYMIAANVAAAKALEAKKSPVMY
RIHEPPSREKLVGLKDYLETFERSFSLGQVITPAVFNRLIDGFSEDDRLPEIMQAILRSQ
TQAYYGPANAGHFGLALGSYAHFTSPIRRYADLIVHRALVDSYKLEVPGKPKDLPARTGL
GEADAKGLSRIGEAISALERRAMEAERETVDRYVAAYLATKTGEIVVARITGVQPFGFFA
TVDGLGGDGLVPVSTLGSERFFYDEAARSLDSEHGRVSYTTGQRIELRLMDANPVSGALR
FELPDAPEGGFRNRPPRRDGIKAKGPGKGPGKDKAGKHMVGKRGRPANIKHKGKRR
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atggtccgaaaaaaacaacatggtctgccgacgcccgagcaaatcctccgctttatcgaa
gagagcaaggacgcggtggggaagcgcgagatcgcgaaacatttcgcgctccagggcaat
gacaagatcgcgctgaaggcgctgctcaaggacatgaccgatgaggggctggtcgacctg
gctcccggacgcgcctttcacaagcatggcggcctgccgcgcgtgaccgtccttcgtatc
gttgcgattgagggcagcaatctatgggcggtgcccgatcgctgggaaggcaccggcccc
gcgccgcgcctgcgcgtaatggagcaaggccgcaagggcgcgcttggcgtcggcgaccgt
atcctcgcgcgcaccgaggaacgcggcagcgggcatgtcgcgcacccgatgaagcgtctt
caggccagcgccgaaatggtgatcggcgtgctcgtcgaggacgtcggccccggcggtaag
ccgatggtctggctgcgacccgccgacaagcgcgcgcgctatgactttgcggtcgccgac
aagggcgatgccgatataggcgaccttgtccgagccgaactcactgggcgcggcgccgcg
atcaaggcgaaggtcatcgaccgcatcggcgatccctttgcgcccagatctttgagcatg
atcgcaatcgcgcggcatgaaattccgcatgttttcggatccgaaaccatcgcggaggct
gaaaaggcggcaaagctgccgctcacgcccgacggacgcgaggatttgcgcgacttgccg
atcgtcgcgatcgacccgatcgacgcgcgcgatcatgacgatgcggtctgggcgatcccc
gacgaccaaccgggcaacaaggacggtttccgcgcgatcgtcgcgatcgccgacgtcagc
tattatgttcgccccgacggcgatctcgaccgcgaggcgcggcgccgcggcaacagcgtc
tatttccccgacagggtcgtcccgatgcttccggagactttgtcggcgggcgtatgctcg
ctcaaggccggcgaggatcgtgcggcgatggcgtgccatctcatcatcgacaagcatggg
aaagtgacgtcatggcgcttcgcccgcgctctggtgcggttgcgcgggaacatcgcctat
gaacatgcgcaggcggcttatgacgccgatacgccgcgcgaagactgggatgcggacgtg
ctcccgacgctaaagaatctgtgggcctgctgggcgctcctcgccaaggcgcgcgccgcg
cgcgatccactcgatctcgacctgcccgaacgtcaggtgatcctcgacgaacagggaagc
attgccgaaatccgcgtccgcgaccggctcgattcgatgcggctgatcgaggattatatg
atcgcggcgaacgtcgccgccgcaaaggcgctcgaggccaagaaatcgcccgtgatgtat
cgcattcacgaaccaccaagccgcgagaagcttgttgggctcaaggactatctcgaaacc
tttgagcgaagcttctcgcttgggcaggtgatcaccccggcagtgttcaaccgcctcatc
gacggcttttccgaagacgaccggttgccagagatcatgcaggcgatactgcgcagccag
acgcaggcctattacggccccgccaacgcgggccatttcggtctcgcgcttggctcatac
gcgcatttcacctcgccgatccgccgctacgccgacctcatcgtccaccgcgcgctggtc
gacagctataaactcgaagtgccgggcaagcccaaggacctgcccgcacgcaccgggctt
ggcgaagccgacgccaaggggctgtcacgtatcggcgaagcgatcagcgcgctcgagcgc
cgtgcgatggaggccgagcgcgagactgttgaccgctatgtcgccgcctatcttgcgacc
aagacgggcgagatcgtcgtcgcgcggatcaccggcgtacaacccttcggcttcttcgcg
accgtcgacgggctcggtggtgacggtctggttccggtttccacgctcggcagcgaacgt
tttttctatgacgaagcggcgcggagcctcgacagcgaacatggccgcgtcagttacacg
acggggcagcgtatcgaactgcgcctgatggacgccaatccggtcagcggcgcactgcgc
ttcgaactgcccgatgcgcccgaaggcggtttccggaaccgtccgccacggcgcgacggg
ataaaggcgaagggcccagggaaggggcctgggaaagacaaggcgggcaagcatatggtc
ggcaagcgcggccgccccgcgaacatcaagcataagggcaagcggcgctaa
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