Sphingopyxis sp. USTB-05: KEC45_08785
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Entry
KEC45_08785 CDS
T10625
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
spus Sphingopyxis sp. USTB-05
Brite
KEGG Orthology (KO) [BR:
spus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spus03032
]
KEC45_08785 (topA)
03400 DNA repair and recombination proteins [BR:
spus03400
]
KEC45_08785 (topA)
Enzymes [BR:
spus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KEC45_08785 (topA)
DNA replication proteins [BR:
spus03032
]
Prokaryotic type
DNA Topoisomerases
KEC45_08785 (topA)
DNA repair and recombination proteins [BR:
spus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KEC45_08785 (topA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
DUF7343
HC2
Motif
Other DBs
NCBI-ProteinID:
USI78967
LinkDB
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Position
complement(1943685..1946249)
Genome browser
AA seq
854 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGRDFKVLASYGHVRDLPPKDGSVDPDDGFAMQWQLYPDKTK
RMKEIQDAAKGADRLILATDPDREGEAISWHVQELLRSKKALPALVDRVTFNAITKQAVT
DAMAHPRELDTDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVERE
REIEAFVAQQYWSVTGLFEMGGTPFKARLSRWRGDKIERLSITNEADARAAEADVKAGHF
TVDAVETKPLTRNPPPPFTTSTLQQEAARKLGFSASHTMRVAQALYEDGAITYMRTDGVQ
MDGSAISAARKAIATRYDGGYVPDQPRQYQTKAKNAQEAHEAIRPTDFSKDKAGSGDHGR
LYELIWKRALASQMASARLERTSVDLSDGTGKTVMRATGQVVKFPGFLALYDESRDDAGD
DEDARLLPAMAKGDAPAKTGVEVESHETQPPPRYSEASLVKKMEELGIGRPSTYASILQV
LKDRAYVTVEKNRFIPEESGRLLTAFLERFFERYVGYDFTAGLEEELDDVSGGRAQWQAV
LERFWRDFKPRTGEVMEQKPSEITAALDEFLGPYLFPDKGDGSDPRLCPNCGTGRLALRG
GKFGPFIACSNYPDCKFTRKFAQPGGSDGADTGPETMGNDPDSGLEVTKRSGRFGPYIQL
GDGKEAKRSSIPKDIPGEDFDLDYALRLLSLPREVGVHPESGKTIMAGLGRYGPYLLHDG
KYAKLTGTAEIFDIGMNAAVVRIAEAAAGGGRGRTKAEPLNTFGPHPTSGGEMKLMEGRF
GPYVTDGTTNATLPKTADPATLTLEEAIALIDARAAKGPAKGKKKAAPKKAAAKKPAAKK
TAAKKAPAKKAAAE
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgcaattggtaattgtggaatcgcccgcaaaggcgaaaacgatcgagaaatatctcggt
cgcgatttcaaggttctggccagctatggccatgttcgcgacttgccgcccaaggacggc
tcggtcgatcctgacgacggctttgcgatgcagtggcagttgtatcccgacaaaacgaag
cggatgaaggaaattcaggacgccgcgaagggcgccgatcgactgattctcgcgactgac
cctgatcgcgagggcgaggcgattagctggcatgtgcaggagttgttgcgcagcaagaag
gcgctgccggcgttggtcgatcgcgtcaccttcaacgcaatcaccaagcaggccgtgacc
gatgcgatggcgcatccgcgcgagctcgacaccgatttgatcgacgcctaccgggcgcgc
cgcgcgctcgactatctcgtcggcttcaccctgtcgccggtgctgtggcgcaaactgccc
ggagcaaaatcggccggccgcgtccagtcggtcgcgctgcggctggtggtcgagcgcgag
cgcgagatcgaggcttttgttgcgcagcaatattggtcggtgaccggcctgttcgagatg
ggcggtacgccgttcaaggcgcggctttcgcgctggcgcggcgacaagatcgagcgcctc
tcgatcacgaacgaggccgacgcgcgcgccgccgaagctgatgtgaaggcgggccatttc
actgtcgatgcggtcgagaccaagccgctgacgcgcaatccgccgccgccgttcacgacc
tcgacgctgcaacaggaagccgcgcgcaagctcggcttctccgcaagccacacgatgcgc
gtggcgcaggcgctctacgaggatggcgcgatcacctatatgcgtaccgacggcgttcag
atggatggaagcgcgatcagcgcggcccgcaaagccatcgcgacgcgctacgacggtggc
tatgtccccgaccagccgcgccagtatcagaccaaggcaaagaatgcgcaggaagcgcat
gaggcgatccgcccgaccgacttttcgaaggacaaggcaggcagcggcgatcatggccgc
ctctacgagctgatctggaagcgtgcgctcgcgagccagatggcgtcggcgcggctcgaa
cgcaccagcgtcgatctgtccgacggcaccggcaagacggtgatgcgcgcgacgggacag
gtggtgaaattccctggattccttgcactctacgacgaaagccgcgacgatgctggcgac
gacgaggatgcgcgcctgttgccggcgatggcaaagggcgatgcgccggcgaaaaccggc
gtcgaggtcgaaagccacgagacacagccgccgccgcgctattccgaagcgagcctcgtc
aagaagatggaggaactcggcattgggcgtccgtcgacctatgcctcgatcctgcaggtg
ctcaaggaccgcgcttatgtgacggtcgagaagaaccgcttcatcccagaggagagcggg
cggctgctgacggcgttcctcgaacgcttcttcgaacgttatgtcggctatgatttcacc
gccgggctcgaggaagaactcgacgacgtgtcgggcggtcgtgcacaatggcaggcggtg
cttgagcgcttctggcgcgatttcaaaccgcgcaccggcgaagtgatggagcagaagccg
tcggagatcaccgcggcgctcgacgaattcctcggcccctatctcttcccggacaagggc
gacggcagcgacccgcgcctctgccccaattgcggcaccgggcgcctcgcgctgcgcggc
ggcaagttcgggccgtttatcgcgtgcagcaactatcccgactgcaaattcacccggaag
tttgcgcagccaggcggtagcgacggtgcggataccggtcccgagacgatgggaaatgat
cccgacagcgggctggaggtgacgaagcgcagcgggcgctttggcccgtatatccagctc
ggtgacggcaaggaggcgaagcggtcgtcgatcccgaaggatattccgggcgaggatttc
gaccttgattatgcactgcgactgctgagcctgccgcgcgaggtcggggtgcatcccgaa
agcggcaagacgatcatggcagggctggggcgttatggcccctatctgctccacgacggc
aaatatgcgaaactgacgggcaccgccgaaatcttcgatatcggcatgaacgccgcggtc
gtgcgcatcgccgaagctgctgcgggcggcgggcgcggacggaccaaggccgagccgctc
aataccttcggcccacatccgacaagcggcggcgagatgaagctgatggaagggcgattc
ggtccttacgtcaccgatggcacgaccaatgcaaccctgcccaagacagcagatccggcg
acgctgacgctggaagaagcgatcgcgttgatcgacgcgcgcgcggcgaaggggccggcg
aagggcaagaaaaaggcggcaccgaagaaagctgcggctaagaagcccgcggccaagaaa
acggctgcaaagaaagctccggccaaaaaggcggcggcggaataa
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