Sphingopyxis sp. USTB-05: KEC45_08985
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Entry
KEC45_08985 CDS
T10625
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
spus Sphingopyxis sp. USTB-05
Pathway
spus03030
DNA replication
spus03430
Mismatch repair
spus03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KEC45_08985 (dnaE)
03430 Mismatch repair
KEC45_08985 (dnaE)
03440 Homologous recombination
KEC45_08985 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spus03032
]
KEC45_08985 (dnaE)
03400 DNA repair and recombination proteins [BR:
spus03400
]
KEC45_08985 (dnaE)
Enzymes [BR:
spus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KEC45_08985 (dnaE)
DNA replication proteins [BR:
spus03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KEC45_08985 (dnaE)
DNA repair and recombination proteins [BR:
spus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KEC45_08985 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
tRNA_anti-codon
COE1_HLH
T2SSK
Motif
Other DBs
NCBI-ProteinID:
USI79005
LinkDB
All DBs
Position
complement(1986656..1990141)
Genome browser
AA seq
1161 aa
AA seq
DB search
MAYSPFVPLRVFSSFTMLEGAIEPKLIAKAARERGFPAIAVADRNGLYGVMAFGEACKAA
GVQPIVGTLLSVARPGPRLANGAPQIDWLALYAQDNAGYDNLCALVSAAHLARPVEQDPH
VLLSDIAGRTDGLICLTGGGEGALTRLLAGEQKSAAEDYVEQLEALFGGRLYIELSRRGD
AAEIAAEAALIDLAYARALPIVATNPANFVEPNFHPAHDAMLCIAQSAYVESEDRRVSSP
EAWLKPAEAMEDAFSDLPEAIRNTLVIAQRCAFMAPKRAPILPSLAGDREGEAAQLKADA
HAGLVARLAHYPELTDEDREAYVKRLDFEVDVITQMGFPGYFLIVADFIKWAKAHDIPVG
PGRGSGAGSVVAWALTITDLDPLKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQ
EKYGRDTVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWTLERALNG
VAELMTEYKQDDGVRRLFDMARQLEGLPRHSSTHAAGVVIGDRPLDQLVPLYRDPRSDMP
VTQFDMKYVETAGLVKFDFLGLKTLSVLKEAKRLLALRGVDVDLDGLAWDDEEVYALLQR
GETVGVFQLESEGMRRTLSAVKPTNFGDIIALVALYRPGPMDNIPLFGARKNGREPIAYP
HPLLEGILAETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKVQAEMDAQRETFVK
GCGEHNQIAPKAANELFDLIDKFAGYGFNKSHAAAYALLSYQTAWLKAHYPHEFFAASMS
FDSHQTDKLSIFIDDMRRLDVGISPPSVNDSEADFSVGRSDDGLTVRYALGALKGVGEKA
MEALVAERAKGDFASLDDFASRIDPKLLNRRQIEALAGGGAFDCIEPDRPRAFAGAESLL
ACANSSAHERSTGQGGLFGGDIAIAPALQLPAAEPWTLAERMTREKDAFGFYFSSHPVEQ
YEAIISARGARSYGDICDNVEMTPGTRIPMVMAAMVESARPRVSQRGNRFLNLTLSDRSG
QFQSSCFDEMAGKTLEALAADGGCAILSVELDLLEGEETPRVTVRGAQSLVDIAATAALQ
LTCRVELPDAIAEIARWLETREDARGKVVIATRDPLTDQDIRVELGRGFALGPDTVSRLE
MIAGVSEAALSLVAQRDFRVR
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggcctacagcccctttgtccccctgcgcgtcttttccagtttcaccatgctggagggg
gcgatcgagcccaagttgatcgcgaaagcagcgcgcgagcgcgggtttccggcgattgcg
gtcgccgatcgcaacgggctctatggggtcatggcttttggcgaagcgtgcaaggcggcg
ggggtgcagccgattgtcggcacgctgctgagcgtcgcccgtccggggccgcgccttgcc
aacggcgcaccgcaaatcgactggctcgcgctctatgcgcaggacaatgccggctatgac
aatctctgcgcgctcgtatcggcggcgcatctcgcccggccggtcgagcaggatccgcac
gtcctgctgtccgatatcgcggggcggaccgatgggctgatctgcctgaccggcggcggc
gagggagcgctgacgcggttgctcgcgggggagcagaagagcgcggccgaggattatgtc
gagcagttggaagcgctgttcggcgggcgcctctatatcgaactctcgcggcgcggcgac
gcggccgagatcgcggccgaagccgcgctgatagatctggcctatgcccgcgcgctcccg
atcgtcgcaaccaacccggcgaattttgtcgagccgaatttccatcccgcgcacgacgcg
atgctgtgtatcgcccaatcggcctatgtcgagagcgaggaccggcgcgtttcaagcccc
gaagcctggctgaaacctgccgaggcgatggaagacgctttctcggacctgccggaggcg
atccgcaatacgctcgtcatcgcacagcgctgcgcgttcatggcgccgaagcgcgcgccg
atcctgccgagccttgccggcgaccgcgagggtgaggcggcgcagctgaaggccgacgcg
catgcggggctcgtggcgcggctcgcgcattatcccgaactgaccgacgaagatcgtgaa
gcctatgtgaagcgcctcgatttcgaggtcgacgtcatcacccagatgggcttccccggc
tatttccttatcgttgccgacttcatcaaatgggcgaaggcgcacgatatcccggtgggg
ccggggcgcggttcgggtgcgggcagcgttgttgcctgggcgctgacgatcaccgatctc
gacccgcttaaactggggttgctgttcgaacgcttcctcaaccccgaacgcgtgtcgatg
cccgacttcgacatcgacttctgcgaaacgcggcgcggtgaggtgatccgctatgtgcag
gagaaatacggccgcgacaccgtcgcgcagatcatcaccttcggaaagctgaaggcgcgc
gccgtgctcaaggacaccggccgtgtgctccagatgagctatggtcaggtcgaccggctc
gcgaagctggtgccgaaccatccgaccgacccctggacactcgagcgcgcgctcaacggc
gttgctgagctgatgaccgaatataagcaggacgatggcgtacgccgtctctttgacatg
gcgcgccagcttgaggggctgccgcggcacagctcgacccatgccgcgggcgtggtgatc
ggcgatcgtccgctcgaccagctggtcccgctctatcgcgacccgcgttcggatatgccg
gtgacgcagttcgacatgaaatatgtcgagaccgcggggctggtgaaattcgacttcctt
ggcctcaagacattgtcggtgctgaaggaagcgaagcgcctgcttgcccttcgcggtgtc
gacgtcgatctcgacgggctcgcgtgggatgacgaggaagtctatgcgctgcttcagcgc
ggcgagaccgtcggggtgttccagttggaatccgaagggatgcggcgcacgctgtcggcg
gtgaagccgaccaatttcggcgacatcatcgcactcgtcgcgctctatcgccccgggccg
atggacaatattccgctgttcggcgcgcgcaagaacgggcgcgagccgatcgcctatccg
catccgctgctcgaaggcatcctcgccgaaacctacggcatcttcgtctatcaggaacag
gtgatgcaggcggcgcagatcctggctgggtacagccttggcggcgccgaccttttgcgc
cgtgcgatgggcaagaaggtccaggctgaaatggacgcgcagcgcgagacgttcgtcaag
ggctgcggcgagcataaccagatcgcgcccaaggccgcgaacgagctgttcgacttgatc
gacaaattcgcgggctatggcttcaacaagagccatgccgccgcttatgcgctgctgtcg
taccagaccgcgtggctcaaggcgcattatccgcacgaatttttcgcggcgtcgatgtcc
ttcgacagccaccagaccgataaattgtcgatcttcatcgacgatatgcggcggttggac
gtcggaatttcgccgccgtcggtcaatgacagcgaggccgatttctcggtcgggcgcagc
gatgacgggctgacggtgcgctacgcgctcggcgcgctgaagggcgtcggcgaaaaggcg
atggaggcgctggtcgccgagcgcgccaagggcgacttcgcctcgctcgacgatttcgcg
agccgcatcgatccaaaattgctcaaccggcgccagatcgaggcgctggcggggggaggg
gcgttcgattgtatcgaacccgaccgtccgcgcgcctttgccggggcagagagcctcctc
gcctgcgcgaacagttcggcgcacgaacgttcgacggggcagggcggcctgttcggcggc
gacatcgcgatcgcgccggctttgcaactgcccgccgccgaaccatggacccttgccgag
cggatgacgcgcgaaaaggacgcgttcggtttctatttttcgtcgcatcccgtcgagcaa
tatgaagcgatcatttcggcgcgcggagcgcgctcttatggcgatatctgcgacaatgtc
gaaatgacgccgggcacgcgcatcccgatggtgatggcggcgatggtcgaaagcgcgcgg
ccgcgcgtgtcgcagcgcggcaaccgcttcctcaatctgaccttgtccgaccgcagcgga
cagtttcagtcgagctgcttcgacgagatggctggcaagacgctcgaagcgctcgccgcc
gacggcggctgcgcgattttgtcggtcgaactcgacctgctcgaaggcgaagaaacgccg
cgggtgacggtacgcggagcccagtcgctcgtggatatcgccgcgacggcggccctgcaa
ctcacatgccgggttgagctgcccgacgcgatagcagagatcgcgcgctggctcgaaacg
cgtgaggatgcgcgcggcaaggtcgtcatcgcgacgcgcgatccgttgaccgaccaggat
atccgcgtcgagctggggcgcggtttcgctttggggccggacaccgtctcgcgtcttgag
atgatcgccggagtgagcgaggcggcgttgtcgctggtcgcgcagcgcgatttccgcgtt
cgttag
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