Sphingopyxis sp. USTB-05: KEC45_13140
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Entry
KEC45_13140 CDS
T10625
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spus Sphingopyxis sp. USTB-05
Pathway
spus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KEC45_13140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spus03019
]
KEC45_13140
Enzymes [BR:
spus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KEC45_13140
Messenger RNA biogenesis [BR:
spus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KEC45_13140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
MerR-DNA-bind
ERCC3_RAD25_C
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
USI75716
LinkDB
All DBs
Position
complement(2838076..2839458)
Genome browser
AA seq
460 aa
AA seq
DB search
MTTFNDFGLHADINRALAAKDYTQPTPIQTQAIPPLMKGRDLCGIAQTGTGKTAGFSLPS
IHHLLTYPHRANPRSCRMLVLAPTRELAAQIAQSCRDYGRFTKLSVSTVFGGVPINKQIR
DLSGGVDILVATPGRLLDLIDQRALRLDDVEIFVLDEADQMMDMGFIHSLRRIAKLLPSR
RQNLFFSATMPKEIAHLAEQFLEDPVTVSVTPAATTVEKISQYSTFVEQKEKQALLHSVI
ASEDIDRALIFTRTKHGADRVVRHLAGAGIKAMAIHGNKSQSQRTHALQAFRSGDIKLLV
ATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGAEGKAISFIAPDERPYMRDI
ERVTRSKSEPMPLPENFNELVRNLPKPAQPPRDTGSQGRNPQRQREDALRGRDGNKPRGD
RGPRRDNAPAGEGAEGQRKRRFRPRNKSVGAHKGAVKRVG
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgacgacttttaacgactttggcctgcacgccgacattaatcgcgcgcttgccgccaag
gattatacccagccgaccccgatccagacgcaggcgatcccgccgctgatgaagggccgc
gacctgtgcggcatcgcgcagaccggtaccggcaagaccgccggcttctcgctgccctcg
atccatcacctcctgacctatccgcaccgcgccaatccgcggagctgccgcatgctcgtt
ctcgcgccgacgcgcgaacttgctgcgcagatcgcgcagagctgccgcgactatggccgc
tttaccaagctcagcgtctcgaccgtctttggcggcgtaccgatcaacaagcagatccgt
gacctttcgggcggcgtcgacattctcgtcgccactcccggccgtctactcgacctgatc
gaccagcgcgccctgcgtctcgacgacgtcgaaatcttcgtcctcgacgaagccgaccag
atgatggacatgggcttcatccactcgctgcgccgcatcgccaagctgctgccttcgcgc
cgccagaacctcttcttctcggcgacgatgccgaaggagattgcgcatctggccgaacag
ttcctcgaagatccggtcaccgtgtcggtcacccccgcggcgaccacggtcgaaaagatc
agccaatattcgaccttcgtcgaacagaaggaaaagcaggcgctgctgcactcggtcatc
gccagcgaagatatcgaccgcgcattgatctttacccgcaccaagcatggcgccgaccgc
gtcgtgcgccatctcgcgggtgcaggcatcaaggcgatggcgatccatggcaacaagagc
cagtcgcagcgcacccacgcgctgcaggcgttccgttcgggcgacatcaagctgctcgtc
gcgaccgacatcgccgcacgcggcatcgacgtatcgggcgtcagccatgtgatcaacttc
gagatcccgaacgttcccgaacaatatgtccaccgcatcggccgcaccgcgcgcgccggc
gccgagggcaaggcgatcagcttcatcgcgcccgatgagcgtccctatatgcgcgacatc
gagcgcgtgacgcggagcaagtccgagccgatgccgctgccggagaatttcaacgagctg
gtgcgtaacctgccaaagccggctcagccgccgcgcgacactggcagccagggccgcaac
ccgcagcgccagcgcgaagacgcgctgcgcggccgcgacggcaacaagccgcgcggcgat
cgcggtccgcgccgcgacaatgcgcccgccggcgaaggcgccgaaggtcagcgcaagcgc
cgttttcgcccgcgcaacaaaagcgtcggagcgcataagggtgcggtgaagcgcgtcggt
tga
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