Sphingopyxis sp. USTB-05: KEC45_15875
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Entry
KEC45_15875 CDS
T10625
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spus Sphingopyxis sp. USTB-05
Pathway
spus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KEC45_15875 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spus03019
]
KEC45_15875 (pnp)
03016 Transfer RNA biogenesis [BR:
spus03016
]
KEC45_15875 (pnp)
Enzymes [BR:
spus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KEC45_15875 (pnp)
Messenger RNA biogenesis [BR:
spus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KEC45_15875 (pnp)
Transfer RNA biogenesis [BR:
spus03016
]
Prokaryotic type
tRNA degradation factors
KEC45_15875 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
DUF3016
Motif
Other DBs
NCBI-ProteinID:
USI76234
LinkDB
All DBs
Position
complement(3392947..3395259)
Genome browser
AA seq
770 aa
AA seq
DB search
MFDVKKVSIEWGGETLTLETGKVARQADGAVMATLGETVVLCAVTAAKSVKDGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINAIAQVLSY
DGHNEPDILAMVAASAALTISGVPFMGPIGAARVGYVDGEYILNPTDAQVAEGDLDLVVA
ATYDAVMMVESEANELSEEIMLGAVLFAHDACKEIVKAIVKLAEQAAKDPWEVAAGDDNA
AIKDKLKKLIGKDIAAAYKLTDKSARSNALNEARAKAKESFVADGLSPQDVMAGIKLTKK
LEAEIVRGAILKDGKRIDGRTTTQIRPIVAETHFLPRAHGSALFTRGETQTIATATLGTK
DAEQMIDGLNGLSYQNFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTKD
EFPYTIRLTSDITESNGSSSMASVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDYAILS
DILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITREIFEAALNQAKEGRAHILGEMNK
ALGETRSELSAHAPRIETMQIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGLIKISS
SDLTQIEAARKWISGIVEEAEVGKIYDGKVVNLVDFGAFVNFMGGKDGLVHVSEIANERV
EKVADVLSEGQEVKVKVLEIDQRGKVRLSMRVVNQETGEELEDTRPPREPRGDRGPRRDG
GDRGDRGPRGGGGRDRDRGPRRDGGGDRGPRRERSEGPEDQGHVPDFLKD
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacgtgaaaaaagtatcgatcgagtggggcggtgaaacgctgactctcgaaacg
ggcaaggttgcccgccaggccgacggcgccgtgatggcgacgctgggcgaaacggtcgtc
ctgtgcgccgtgaccgccgcgaagtcggtgaaggacgggcaggacttcttcccgctcacc
gtccactatcaggaaaaatattcggccgccggccgcatcccgggcggcttcttcaagcgc
gaacgcggcgcgaccgaaaaggaaacgcttgtcagccgcctgatcgaccgtccgatccgc
ccgctgttccccgaaggtttctacaacgaaatcaacgccatcgctcaggttctgagctat
gacggccacaacgagcccgacatcctcgcgatggtcgccgcttcggccgcgctcaccatc
tcgggcgtgcccttcatgggcccgatcggcgccgcgcgcgtcggttatgtcgacggcgaa
tatatcctgaacccgaccgacgcacaggttgccgagggcgacctcgatctcgtcgtcgcc
gccacctatgacgccgttatgatggttgaatccgaagccaatgagctgtcggaagaaatc
atgctcggcgccgtcctgttcgcgcacgacgcgtgcaaggaaatcgtcaaggcgatcgtc
aagctcgccgaacaggctgccaaggatccgtgggaagtcgccgcaggcgacgacaatgct
gcgatcaaggacaagctgaagaagctgatcggcaaggacattgccgccgcctacaagctg
accgacaagtcggcccgctcgaacgcgctcaacgaagcgcgtgcgaaggcgaaggaatcg
ttcgtcgccgacggcctgtcgccgcaggacgttatggccggcatcaagctgaccaagaag
ctcgaagccgaaatcgttcgcggcgccatcctcaaggacggcaagcgcatcgacggccgc
acgacgacgcagatccgtccgatcgttgccgaaacgcacttcctgccgcgcgcgcacggc
tcggcgctgttcacgcgtggcgagacccagacgattgcgaccgcgacgctgggcaccaag
gatgcggagcagatgatcgacggcctcaacggcctgtcgtaccagaacttcatgctgcat
tataacttcccgccctattcggtcggtgaagtcggccgcttcggcgcgccgggccgccgc
gaagtcggtcatggcaagctggcatggcgcgcgctgcaccccgtgctgccgacgaaggac
gaattcccctacacgatccgcctgaccagcgacatcaccgagtcgaacggctcgtcgtcg
atggcgtcggtttgcggcggttcgctcgcgatgatggacgccggcgtgccgatcaagcgc
cccgtctcgggcatcgcgatgggcctgatcctcgaaggcaaggactatgcgatcctgtcg
gacatcctgggcgatgaagaccatcttggcgacatggacttcaaggttgcgggcacgtcc
gaaggcatcaccacgatgcagatggacatcaagatcgcgggcatcacgcgcgagatcttc
gaggccgcgctcaatcaggccaaggaaggtcgcgcgcacatcctcggtgagatgaacaag
gcgctcggcgaaacccgcagcgaattgtcggcgcacgcgccgcgcatcgagacgatgcag
atcgacaagtcgaagatccgcgacgtcatcggtaccggcggcaaggtgatccgcgagatc
gtcgcgaccaccggcgccaaggtcgacatcgacgacgaaggtctgatcaagatctcgtcg
agcgacctcacgcagatcgaagcggcgcgcaagtggatcagcggcatcgtcgaggaagcc
gaagtcggcaagatctatgacggcaaggtcgtcaacctggtcgatttcggtgcgttcgtg
aatttcatgggcggcaaggacggtctcgtccacgtcagcgaaatcgccaacgagcgcgtc
gagaaggtggccgacgtcctgtccgaaggccaggaagtcaaggtcaaggtcctcgagatc
gaccagcgcggcaaggttcgcctgtcgatgcgcgtcgtgaaccaggaaaccggcgaagaa
ctcgaagatacccgcccgccgcgcgaaccgcgcggtgatcgtggcccgcgtcgggacggc
ggcgaccgtggcgatcgcggcccgcgtggcggcggtggtcgtgaccgcgatcgtggcccg
cgccgcgacggcggtggtgaccgcggtccgcgccgcgaacgcagcgaaggcccggaagat
cagggtcacgtgcccgacttcctgaaggactaa
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