Sphingopyxis sp. USTB-05: KEC45_17680
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Entry
KEC45_17680 CDS
T10625
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
spus Sphingopyxis sp. USTB-05
Pathway
spus03410
Base excision repair
spus03430
Mismatch repair
spus03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KEC45_17680 (recJ)
03430 Mismatch repair
KEC45_17680 (recJ)
03440 Homologous recombination
KEC45_17680 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spus03400
]
KEC45_17680 (recJ)
DNA repair and recombination proteins [BR:
spus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KEC45_17680 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KEC45_17680 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KEC45_17680 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
DUF6986
Motif
Other DBs
NCBI-ProteinID:
USI76564
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All DBs
Position
3817220..3818998
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AA seq
592 aa
AA seq
DB search
MSDTASSLALGITHSIKGQPWHWRRASADMASENLAPDDLVTQLLLARGVARGDLDRQRT
PTLRGFMPDPSLFRDMDAAAARLADAVERKEAVTIFGDYDVDGATSAALLVRLLRGLGLP
VGAYIPDRLMEGYGPSGAALVKIGEAGSKLVVTVDCGAQAFDAISEAKAAGVEVIVVDHH
QCATTLPEAFALVNPNRLDEEPDAAIHGNLAAVGVAFLLGAAVLRTLRARGFFSGRNEPA
LIDLLDLVALGTVADVARLTGFNRALVTQGLKVMARRGNTGLAALMDAARLTKPPSASDM
GFALGPRINAGGRVGKSDLGVRLLTTSDPQEAADIALELNRLNEERRAIEAAVLEQAIEA
SAGCGNAPVAIVAGEGWHPGVIGIVAGRLKERLHRPAIVIAVDDDGIGKGSGRSINGVDL
GAAILAAKETGLLVAGGGHAMAAGLTVAADKVDALGAFLNDRLAADVERASGDKSLLIDA
VLAPRGINPLWCDAIESAGPYGAGWPAPRVATGPVRIVESGIVGTDHVRLIVSGDDGARF
KAVAFRSAETELGQALLHARGRKLWLAGRAKRDDWGSRPAAELHLEDAAWAD
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaccgcaagcagcctggctttgggcatcacgcattcgatcaagggccagccc
tggcattggcggcgcgcgagcgccgacatggcgtcggagaatctcgcgcccgacgatctc
gtcacgcaattgctgctcgcgcgcggggtggcacggggcgatctcgaccggcagcggacg
ccgaccttgcgcggcttcatgcccgacccgtcgttgttccgcgacatggacgccgccgcc
gcgcggcttgccgatgcggtcgagcgcaaggaagcggtgacgatcttcggcgactatgac
gtcgacggcgcgacctcggccgccttgctcgtgcggctgctgcgcggcctcgggcttccg
gtcggcgcctatatccccgaccggttgatggagggatatggcccctccggcgccgcgctg
gtgaaaatcggcgaggcgggatcgaagcttgtcgtcacggtcgactgcggcgcgcaggca
tttgatgcgatttcggaggcgaaggcggcgggggtcgaggtgatcgtcgtcgaccatcac
caatgcgcgacgaccctccccgaagcctttgcgctggtgaaccccaaccggctcgacgaa
gagcccgatgccgcgatccacggtaatctggcggcggtcggcgtcgccttcctgctcggc
gcggcggtgctccgcaccttgcgcgcgcgcggtttctttagcggccgcaacgaaccggcg
ctgatcgatctgctcgatcttgtcgcgctgggcaccgtcgccgacgtcgcgcggctcacc
ggtttcaaccgcgcgctggtgacgcaggggctgaaggtgatggcgcggcgcggcaacacg
ggccttgcggcgctgatggacgccgcgcgcctgaccaaaccgccaagcgcgagcgacatg
ggctttgcgctcggcccgcggatcaacgccggcgggcgcgtcggcaaatccgaccttggc
gtgcggttgctcaccaccagcgacccgcaggaagcggccgatatcgcgctcgaactcaac
cggctgaacgaggaaaggcgtgcgatcgaagctgccgtgctcgaacaggcgatcgaagca
agcgcagggtgcggcaacgctcctgtcgcgatcgtcgcgggcgagggctggcatcccggc
gtgatcggcatcgtcgccgggcgcctcaaggaacgcctccaccgccccgcgatcgtcatt
gccgtcgacgacgacggcatcggcaagggatcgggacgctcgatcaacggcgtcgacctt
ggcgccgcgatcctcgccgcgaaagaaaccggcctgctcgtcgcgggcggcggccatgcg
atggcggccggcctcaccgtcgctgcggacaaggtcgatgcgcttggcgctttcctcaac
gatcgcctcgccgccgatgtcgagcgcgcgagcggcgacaagtcgctgctgatcgacgcg
gtgctcgcgccgcgcggcatcaatcctttgtggtgcgatgccatcgaaagcgcgggcccc
tatggcgccggctggcccgcaccgcgcgttgcgacggggccggttcgaatcgtcgaatcg
gggatcgtcggcaccgaccatgtccgcctgatcgtgtcgggcgacgacggcgcacggttc
aaggcggtcgcattccgcagcgccgaaaccgaattggggcaagcgctgctccacgcacgc
ggccgcaaattatggctggcggggcgcgcgaaacgcgacgattggggcagtcgcccggcc
gccgaactgcatctggaggacgccgcgtgggccgattag
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