Sphingopyxis sp. USTB-05: KEC45_18885
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Entry
KEC45_18885 CDS
T10625
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
spus Sphingopyxis sp. USTB-05
Pathway
spus03030
DNA replication
spus03430
Mismatch repair
spus03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KEC45_18885 (holA)
03430 Mismatch repair
KEC45_18885 (holA)
03440 Homologous recombination
KEC45_18885 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spus03032
]
KEC45_18885 (holA)
03400 DNA repair and recombination proteins [BR:
spus03400
]
KEC45_18885 (holA)
Enzymes [BR:
spus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KEC45_18885 (holA)
DNA replication proteins [BR:
spus03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KEC45_18885 (holA)
DNA repair and recombination proteins [BR:
spus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KEC45_18885 (holA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HP_1247_M
Motif
Other DBs
NCBI-ProteinID:
USI76783
LinkDB
All DBs
Position
complement(4085517..4086548)
Genome browser
AA seq
343 aa
AA seq
DB search
MKTVKPNELERLSRLDPAVRFTLLTGPDEATMEAVASHLLGLAGKDAERLDLTGSQLSQD
PSLLAAEAASMSLFSSARVIKVDLSGSGDDALAAVEALLAAETAINPVIATGASVTAKSK
LVKLVEGSDHAVAAICYQPDRRQLVGIAMAAAQEQGLRVANADAQLLVDLVSGDQALMRR
EIEKIALYLDAGPDRQRQVTAADIAALGAATHEEDVSECINVALGGKVRELPEMLATAAA
VGVAEIRIIRALAIRAMALARLRAEVDGGAHPATVVSARTSGIFWKERDAVTAQLHIWDS
VRIARLMSRLLDCERALKASGTAGAVLFRKLMTDIAHQAARAR
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgaagacggtcaaaccgaacgaactcgaacgcctgtcgcgcctcgaccccgcggttcgc
ttcactctcctcaccggtcccgacgaagcgacgatggaagccgtcgcgagtcatttgctc
gggctcgcgggcaaggatgccgaacggctcgacctgactggatcgcagctctcgcaggac
ccgtcgctgctcgccgccgaagccgcttcgatgtcgctcttttcgtcggcgcgcgtgatc
aaagtcgaccttagcggcagcggcgacgacgccctcgccgcggttgaggcgctgctggcg
gccgaaaccgcgatcaacccggtgatcgcgaccggcgcgtcggtcaccgccaaatcgaaa
ctcgtcaagctggtcgaaggatcggaccatgcggtcgccgcgatctgttatcagcccgat
cgacgccaactcgtcggcatcgcgatggcggcggcgcaggaacagggattgagggtggcc
aacgccgacgcgcaattgctcgtcgacctcgtctcgggcgatcaggcgctgatgcggcgc
gagatcgagaagatcgcgctttatctcgacgcgggtcccgaccgacagcggcaggtcacc
gccgccgacatagccgcgctcggtgccgcgacgcacgaggaggatgtcagcgagtgcatc
aatgtcgcgctcggcggcaaggtgcgcgagcttccagagatgctggcaacggcggcagcg
gtcggcgttgccgagatccggatcatccgcgcgctcgcgatccgcgccatggcgctcgcc
cgtctgcgcgccgaggtcgacggcggcgcgcatcccgcgaccgtcgtctcggccaggacc
agcgggattttctggaaagagcgcgatgccgtgaccgcgcagctccacatctgggattcg
gtccgcatcgcgcggctgatgagccgcttgctcgattgcgaacgcgcgctgaaggcgtcg
ggtacggcgggcgccgtgctgttccgcaagctgatgaccgacatcgcacaccaggccgcg
cgggcgcggtag
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