Sphingopyxis sp. USTB-05: KEC45_20330
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Entry
KEC45_20330 CDS
T10625
Name
(GenBank) 2'-5' RNA ligase family protein
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
spus Sphingopyxis sp. USTB-05
Brite
KEGG Orthology (KO) [BR:
spus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spus03016
]
KEC45_20330
Enzymes [BR:
spus01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
KEC45_20330
Transfer RNA biogenesis [BR:
spus03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
KEC45_20330
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Ortholog
Paralog
GFIT
Motif
Pfam:
2_5_RNA_ligase2
LigT_PEase
Motif
Other DBs
NCBI-ProteinID:
USI77051
LinkDB
All DBs
Position
complement(4373414..4373911)
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AA seq
165 aa
AA seq
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MAKPPPEVQAAIAALPRNDRGRGPELLHVTLISLYDLHYAPPEWLPATIAALDSFAAAPF
ALRFDRIENRKAVTLRTRDPLAGARAFQKVLVNHLLREKAPIMDGTTPEPHITINYRGDR
LGSETLGKKTPPIGWTVDEIILMESIVGKTTHVEHGRWPLCGDAG
NT seq
498 nt
NT seq
+upstream
nt +downstream
nt
atggccaagccgccgccggaggtgcaggcggcgatcgccgcgttgccgcgtaacgaccgc
ggacgcggccccgagctgctccatgtcacgctcatctcgctctacgacctccactatgcg
ccgcccgagtggctgcccgcgaccatcgccgcgctggacagcttcgccgcggcgcccttc
gcgctccgcttcgaccggatcgagaaccgcaaggcggtgactttgcgcacgcgcgatccg
ctggccggggcgcgggcgttccagaaggtgctggtgaaccatctgctgcgcgaaaaggcg
ccgatcatggacggcaccacccccgaaccgcatatcacgatcaactatcgcggcgaccgg
ctgggcagtgagacgctgggcaaaaagacgccgccgatcggctggacggtggacgagatc
atcctgatggaaagcatcgtcggcaagacgacccatgtcgaacatggccgctggccgctg
tgtggggatgcgggctaa
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