Sphingobium sp. WTD-1: N6H05_00475
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Entry
N6H05_00475 CDS
T10837
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
spwt Sphingobium sp. WTD-1
Brite
KEGG Orthology (KO) [BR:
spwt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spwt03032
]
N6H05_00475
03400 DNA repair and recombination proteins [BR:
spwt03400
]
N6H05_00475
Enzymes [BR:
spwt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
N6H05_00475
DNA replication proteins [BR:
spwt03032
]
Prokaryotic type
DNA Topoisomerases
N6H05_00475
DNA repair and recombination proteins [BR:
spwt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
N6H05_00475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
WIA56345
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All DBs
Position
94815..95822
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AA seq
335 aa
AA seq
DB search
MSSPAIIHSHDGMPGISRRALKQGWAYRAADGSRITDRDEIDRLNAIAMPPAYRDCWFCP
SPHGHIQATGYDERGRKQYRYHPDFRAAREAEKYAGCPAFGRALPQLRAQMEEDLARRGL
RKARTIAAVVRLLDLAKLRVGNEHYATTNKSFGATTLRRRHVDLNGRSLTLRYRAKSGKE
QQLSITDSRLLRFVRAVQDLPGQHLFQYLDEDGEARPISSSDVNAYIAQAMGGDFTAKHF
RTWGASTIAFETLAAGHVSLKEMIDPVAAALGNTPAISRKSYIHPALIDLCKDGQDEWRQ
GLRLPRRTRYLSRHERGLIAFLDDLANAPPLAAAA
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcccccgccatcatccacagccatgacggcatgcccggcatcagccggcgcgcg
ctgaagcagggatgggcctatcgcgcggcggatggcagccgcatcaccgaccgggacgag
atcgaccggctgaacgcgatcgccatgccgcccgcctatcgcgactgctggttctgcccc
tccccccacggccatatccaggcgaccggctatgacgagcgggggcgcaagcaatatcgc
tatcaccccgatttccgggctgcgcgcgaggcggagaaatatgccggctgccccgccttc
ggccgcgccctgccgcaactgcgggcgcagatggaagaggatctggcgcgacgcggcctg
cgcaaggcgcggacgatcgcggcggtggtgcggctgctggacctcgccaagctgcgggtc
ggcaacgaacattatgccaccaccaacaagagtttcggcgcgaccacgctgcggcggcgg
catgtcgacctgaatggccgcagcctgaccctgcgctaccgcgccaagtccggcaaggag
cagcagctgagcatcaccgacagccgcctgctgcgcttcgtgcgggcggtgcaggatctg
ccgggccagcatctgttccaatatctggacgaggatggcgaggcgcggccgatcagttcg
agcgacgtcaacgcctatatcgcgcaggccatgggcggcgacttcaccgccaagcatttc
cgcacctggggcgcgtccaccatcgccttcgagacactggccgctggccatgtctcgctc
aaggagatgatcgacccggtcgcggcggcgctgggcaacacgccggcgatcagccgcaaa
tcctatatccaccccgccctgatcgacctgtgcaaggacggacaggatgaatggcggcag
gggcttcgcctgccgcgccggacgcgctatctgtcgcgtcacgaacgcgggctgatcgcg
ttcctcgacgatctggccaacgcgcccccgctggcagcggcggcctga
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