Sphingobium sp. WTD-1: N6H05_01055
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Entry
N6H05_01055 CDS
T10837
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
spwt Sphingobium sp. WTD-1
Pathway
spwt03410
Base excision repair
spwt03430
Mismatch repair
spwt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spwt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
N6H05_01055 (recJ)
03430 Mismatch repair
N6H05_01055 (recJ)
03440 Homologous recombination
N6H05_01055 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spwt03400
]
N6H05_01055 (recJ)
DNA repair and recombination proteins [BR:
spwt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
N6H05_01055 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
N6H05_01055 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N6H05_01055 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
WIA56450
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All DBs
Position
complement(204785..206551)
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AA seq
588 aa
AA seq
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MTFALNITRSITGQPWRWRGLGADARSPGYQPDDLVAQLLLARGCPPDGVEAHRNPTIRH
FMPDPSLFRDMDAAAERLADAVQRGEDVRIFGDYDVDGATSAALLIRLLRDIGLDARPYI
PDRLMEGYGPSGEALVRLAGDGAQLIVTVDCGAQAFEALDMAKAAGVDVVVVDHHKCAAA
LPVALALVNPNRLDENAGAAVHGHLAAVGMAFLLGAALLRTLRARGWFATRPEPAIMELL
DIVALGTVADVAQLKGLNRAFVAQGLKVMAKRRNIGLAALMDASRLNRAPLCHDLGFALG
PRINAGGRVGKADLGVRLLTTEDPAEAARIAAELDRLNEERRAIESIVQEQAEALLAAQD
NRAVALVAGPGWHPGVIGIVAGRLKERAGRPAIVVALDEDGVGKGSGRSISGVDLGAAVL
AAKDSGLLVAGGGHAMAAGLTVMADKVDALAEFLDDRLSAAVARARDERALLIDAVLAPA
GVNPDFVAAIEAGGPYGAGWPAPLIAAGPMRVIRADVVGNGHLRAIMAGDDGRSIKTIAF
RQAESELGQAILGAPRDRRLWVAGRAKIDDWGSRPAAELHLEDAAWAD
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgcgctcaacatcacccgttcgatcactggccagccctggcgctggcgcggc
ctgggggcggacgcgcgttcgcccggctatcagcctgacgatctggtggcgcagctgctg
ctggcgcgcggctgcccgcccgacggggtggaggcgcatcgcaatcccaccatccgccat
ttcatgcccgatcccagcctgttccgcgacatggacgcggcggccgagcggctggcggat
gcagtccagcgcggcgaggatgtgcgcatcttcggcgattatgacgtcgatggcgcgacc
agcgcggcgctgctgatccggttgctgcgcgacattggccttgatgcccggccctatatc
cccgaccggctgatggagggctatggcccctcgggcgaggcgctggtgcggcttgcgggg
gatggcgcgcaactgatcgtcaccgtcgattgcggcgcgcaggcgttcgaggcgctcgac
atggcaaaggccgccggggtcgatgtcgtcgtcgtcgaccatcataaatgcgcggcggcg
ctgccggtggcgctggccctggtcaatcccaaccggctggacgagaatgcgggcgcggcc
gttcatggccatctcgccgccgtcggcatggctttcctgctcggtgcggccttgctgcgg
acgctgcgcgcgcgcggctggttcgcgacccggccggaaccggcgatcatggaattgctc
gacatcgttgcgctgggcaccgtcgccgacgtcgcgcagctcaaggggctcaaccgcgcc
ttcgtggcgcaggggctcaaggtcatggccaagcggcgcaatatcggcctcgccgcgctg
atggatgccagtcgcctcaatcgtgcgccgctctgccatgacctcggcttcgcgctcggt
ccgcgaatcaatgctggtggacgtgtcggcaaggcggatctgggggtgcgcctgctcacc
accgaagatccggccgaggccgcccgaatcgccgccgaactggatcgattgaacgaggaa
cggcgtgcgatcgaatcgatcgtgcaggaacaggcggaggccttgctggcggcgcaggac
aatcgcgcggtggcgctggtcgccgggccgggctggcatccgggcgtcatcggcatcgtt
gccggacggctcaaggaacgggccggccgtcccgccatcgtcgtcgcgctggacgaggat
ggcgtgggcaagggatcgggccgctccatttccggcgtcgatctgggcgcggcggtgctg
gcggccaaggatagcggcctgctggtcgcgggcggcggccatgcgatggcggcgggcctg
accgtgatggccgacaaggtcgatgcgctggccgagttcctggacgatcgcctgtcggcc
gccgtcgcgcgtgcgcgggacgagcgtgcgctgctgatcgacgcggtgctggcgccggcc
ggggtcaatcccgacttcgtcgccgcgatcgaggcgggcggcccctatggcgcaggctgg
cccgcgccgttgatcgccgccgggccgatgcgggtgattcgcgccgatgtggtcggcaat
ggccatttgcgggcgatcatggcgggcgatgatggccggtcgatcaagacgatcgcgttc
cgtcaggccgaatcggaactgggtcaggcgattctgggtgcgccgcgtgaccgtcgcctc
tgggtggcgggccgtgcgaagatcgatgattggggcagccgacccgccgcagagctgcat
ctggaggacgccgcctgggcagattga
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