Sphingobium sp. WTD-1: N6H05_03090
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Entry
N6H05_03090 CDS
T10837
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
spwt Sphingobium sp. WTD-1
Pathway
spwt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spwt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
N6H05_03090 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spwt03400
]
N6H05_03090 (ligD)
Enzymes [BR:
spwt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
N6H05_03090 (ligD)
DNA repair and recombination proteins [BR:
spwt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
N6H05_03090 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WIA56815
LinkDB
All DBs
Position
complement(596809..599322)
Genome browser
AA seq
837 aa
AA seq
DB search
MSRINPLASYNAKRDFNRTSEPEGKMAKKGGNSFVVQKHAATRLHWDFRLEVDGVLKSWA
VTKGPSLDPDDKRLAVRTEDHPLSYGSFEGNIPKGEYGGGSVMLWDRGWWEPIPGKSAKD
IEDGHLHFILHGERMKGEWLLVRMKGRAGEKRENWLLRKIEDGEARRNGDLVERALTSVL
TDRSMAQIAGDIAGTQSLKGARGKTFTDRMQAANAHNAKIGRTKVKAIARTEAMPRFIKP
QLATLVDHVPVGNEWLHEIKYDGYRALVAASGEAIKIYTRSGLDWTDKFGALAGAIKALD
LPPALIDGEIIAFDADGNPSFSALQAVLKRGHGAERADTPFHFFAFDLLSLDGMDLKSLP
AIERKERLEALLADAEQPIHVADHLIGSGEKLYRSLCQAGQEGIIAKRVDAPYRSGRTRA
WVKVKCTRRQEFVIVGWTRSKVKGRAFSSLLLAQHEGGELVYKGKVGTGFDAATMTDLAE
AMSPIATGTSQIIISAAQACGVQWVKPKLVAEVGFAEFTREGLVRHGSFLGLRSDKLAKT
IKPEKAAPTPPSATAIKISNRARVIFPESGQTKGELADYYARIAPLMLPFAANRPISLVR
CPQGRAKKCFFQKHDSGAFGDHVRHVAIREKDGGLEDYLYVDDADGLIACVQMGTIEFHG
WASRADAIEKPDRMIFDLDPDEGMDFARVREAAKDIRDHLRDIGLISFAMLSGGKGVHVV
VPLSPTHDWDAHKDFAARFAQALSAAEPDRFVATMSKAKRKDRIFIDWLRNQRGSTAILP
YSARARAGAPVAIPVDWDELNDLQDAHPFDIGDAEILGERATKLKGWGFAAQTLPDL
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgagccggatcaatccccttgcctcctataatgccaaacgggacttcaatcgcaccagc
gagcctgaaggcaagatggcaaagaagggcggcaacagtttcgttgtccagaaacatgcc
gccacaaggctgcactgggacttccggctggaagtcgatggcgtgctcaagagctgggcc
gtcaccaaggggccgagcctggatcccgatgacaagcggcttgctgtccgcaccgaagat
catcctctgagctatggcagtttcgagggtaatattcccaagggcgaatatggcggcggc
agtgtgatgctctgggaccgcggttggtgggaaccgatcccgggaaagagcgcgaaggat
atagaggatggccatctccatttcatcctgcatggcgaacggatgaagggggaatggctg
ctggtgcggatgaaggggcgcgcgggcgaaaagcgcgagaattggctgctccgcaagatt
gaggatggcgaagcccgccggaatggcgatctggtcgagcgcgcgctgacaagtgttctg
actgaccgatccatggcgcaaatcgccggggacatcgccggcacgcagtcattgaaaggc
gcaaggggcaagacattcacggataggatgcaggcggcaaacgcgcataatgcaaagatc
ggcaggacgaaggtgaaggcgatcgccagaacggaggctatgccgcgcttcatcaagccg
cagcttgcaactttggtcgaccatgtaccggtcggcaacgaatggctgcacgagatcaaa
tatgacggatatcgcgcgctcgttgcagccagtggcgaagcgataaaaatatatacgcgc
agcggcctggactggacggacaaatttggtgctttggccggagccataaaagcgctcgac
ctcccgcctgccttgatcgacggcgagatcatcgcctttgacgctgacggcaatcccagt
ttttcggcgctgcaggcggtgttgaaacggggccatggcgcggagcgagccgacacgccg
ttccatttcttcgcttttgatcttctttcccttgacggcatggatttgaagtctctcccc
gcaatcgagcgaaaggagcggctcgaagccttattggcggatgcggaacaacctatccac
gttgccgatcacctgatcggctcgggcgagaagctctaccgatcgctttgtcaggccggg
caggaaggcattatcgcaaagcgcgtcgatgcgccctatcgcagcggacggacacgcgcc
tgggtgaaggtcaaatgcactcgtcggcaggaattcgtgatcgtcggctggacccgtagc
aaggtaaaagggcgtgccttctcctccctgctactggcgcagcatgaaggcggtgaactg
gtctataagggcaaggtcggcactggtttcgatgccgccacaatgaccgacctggccgag
gccatgagtccgattgcgaccggcacgtcgcagatcatcatttccgccgcccaagcgtgc
ggcgtccaatgggtcaaacccaagctcgttgcggaagtcggttttgccgagttcacaagg
gagggtctcgtgcgacatggcagttttctggggctacgaagcgacaagttggcaaagaca
atcaagcccgaaaaagcggccccaacgcctccttcggccacagccatcaagatcagcaat
cgcgcgcgcgtgattttcccggagagcgggcagaccaaaggggagttggccgattattac
gcgcggatcgccccgctgatgctacctttcgccgccaatcggccgatcagtcttgtgcga
tgcccccagggccgtgcgaagaaatgctttttccagaaacatgacagcggcgcctttggc
gaccatgtccgccatgttgcgatccgcgagaaagacggcggcttggaagattatctctat
gtcgacgatgccgatggcctgatcgcctgcgtccagatgggtacgatcgaatttcacggc
tgggcgagccgtgccgatgccatcgagaagcccgatcgcatgatcttcgatcttgatccc
gacgagggcatggattttgcacgggtgcgtgaagcggcaaaggatattcgcgatcatcta
cgcgacatcggtctgatctccttcgccatgctgtcgggagggaagggggtccatgtcgtc
gtccccctcagccccacccacgactgggacgcacataaggatttcgctgcccgtttcgcc
caggccttgagcgcggcagaacccgatcgctttgttgccacgatgagcaaggccaagcgc
aaggatcgcatattcatcgactggctgcgcaatcagcgcggcagcaccgccatccttccc
tactcggcgcgcgcgcgtgccggcgcgcccgtagccataccggtcgactgggacgaattg
aacgatttgcaggacgcccatcccttcgacattggagatgccgaaatattgggggagcgc
gcaacgaagctcaaaggctggggcttcgctgcgcagaccctgccggatctatga
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