Sphingobium sp. WTD-1: N6H05_03485
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Entry
N6H05_03485 CDS
T10837
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
spwt Sphingobium sp. WTD-1
Pathway
spwt04141
Protein processing in endoplasmic reticulum
Brite
Messenger RNA biogenesis [BR:
spwt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
N6H05_03485
Ribosome biogenesis [BR:
spwt03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
N6H05_03485
Membrane trafficking [BR:
spwt04131
]
SNARE
SNARE associated proteins
Others
N6H05_03485
Autophagy
Aggrephagy
Other aggrephagy associated proteins
N6H05_03485
Exosome [BR:
spwt04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
N6H05_03485
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WIA58617
LinkDB
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Position
complement(680469..682757)
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AA seq
762 aa
AA seq
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MADQDSSGRRIQVANARPEDAGRGLARLPLTVMAELQLAEGDVVEIVGKRSTPARVVRPY
KEDEGLDVLRLDGLQRANAGVGSGDFVQLRKIDPRPAQRVVFAPAQNNLRLQGNPDALKR
VFFQRPLVAGDVVATAGQQQVPPGDMPAHLRQMLAAPAYALQEIRLIVVSTVPKGIVHID
AETEVELRAEYEEPRESRRADVTYDDVGGMAETIDQLREMVELPLRYPELFERLGVDPPK
GVMLHGPPGTGKTRLARAVANESEAEFFLINGPEIMGSAYGESEKKLRDIFEEAAKAAPS
ILFIDEIDSIAPKRGQVTGETEKRLVAQLLTLMDGLEPRTNLVVIAATNRPEAIDEALRR
PGRFDREIVVGVPDERGRREILGIHTRGMPLGDRVDLAELARMTYGFVGADLAALTREAA
IETVRRLMPRLNLEEGTIPPDVLEDLSVTREDFLSAIKRVQPSAMREVMVQAPNIGWADI
GGLDDAQMRLKEGVELPLKDPDAFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAREAQANF
IATKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGLGEPAVTERV
VNTILAEMDGLEELQSVVVIGATNRPTLVDPALLRPGRFDELIYVPVPDQAGRKRILAIH
TKKMPLAGDVDLDQLAQRTERFTGADLEDLSRRAGLIALRQSLRVEAVTMAHFEAALEET
RASVTPEMEREYEQIQATLKQSAMQVDPIGFIAPGMLRARER
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggccgatcaggatagcagcggacgcaggattcaggtcgccaacgcgcggccggaagat
gcggggcgcggtttggcgcggcttccgctgacggtaatggccgaattgcagttggccgaa
ggcgatgtcgtagagattgtcggcaagcgttcgactccggctcgggtagtgcgtccctac
aaggaagatgaggggctggacgtgttgcggctggatggtttgcagcgcgccaatgccggc
gtcggctcgggcgacttcgtccagctgcgcaagatcgatccgcgtccggcccagcgcgtg
gtgttcgcgcctgcacaaaataatctccggctccagggcaatcccgatgcactgaagcgg
gttttctttcagcggccgcttgtcgcgggcgatgtcgtcgccaccgccggccagcaacag
gtgccgcccggcgacatgccggcccatctgcgacagatgctggcggcgccggcctatgcg
ctgcaggaaatccgcctgatcgtggtgtcgaccgtgcccaagggcatcgtccatatcgat
gccgagaccgaggtggaactgcgcgccgaatatgaggagccgcgtgaatcccgccgggcc
gacgtcacctatgatgatgtcggcggcatggccgaaacgatcgaccaattgcgcgagatg
gtcgagctaccgctgcgctatcccgaattgttcgagcgactgggcgtcgatccgcccaag
ggggtcatgctccatggaccgccgggcaccggtaagacccggctcgcccgcgccgtcgcc
aatgaatcggaagccgaattcttcctcatcaacggccccgaaatcatgggctcggcctat
ggcgagtcggaaaagaagctgcgcgacattttcgaggaagcggccaaggcggcaccctcc
atcctctttatcgacgagatcgactcgatcgcgcccaagcgcggtcaggtcaccggcgag
acggaaaagcgcctcgtcgcccagcttctcacgctgatggacgggctggagccgcgcacc
aatctggtcgtcatcgccgccaccaaccggcccgaggcgatcgatgaagcgctgcgccga
cccggccggttcgaccgcgaaatcgtcgtcggcgtgcccgacgaacgcggccggcgcgag
atattgggcatccatacccgcggcatgccgctcggcgaccgggtcgatctcgccgaactg
gcgcgcatgacctatggctttgtcggcgccgatcttgccgcgctgacccgcgaggccgcg
atcgagacggtgcgccggctgatgccgcgccttaatctggaggaaggcacgatcccgccc
gacgtgctggaggatctgtcggtcacgcgggaggatttcctctcggcgatcaagcgggtc
cagccctcggccatgcgcgaggtgatggtgcaggcgcccaatatcggctgggccgacatt
ggcggcctggacgatgcccagatgcgcctcaaggaaggggtcgaactgccgctcaaggat
cccgacgccttccggcgcctgggcatccgcccggccaagggcttcctcctctatggtccg
ccgggcaccggcaagacattgctggccaaggcggtcgcgcgtgaggcgcaggccaatttc
atcgccaccaagtcgagcgacctcctgtccaaatggtatggagagagcgagcagcagatt
gcccgcctgttcgcccgcgcgcgacaggtggcgccgaccgtcatctttatcgacgaactg
gacagcctggtccccgcccgtggcggtggccttggcgagccggccgtaacggagcgggtg
gtcaacaccatcctcgccgaaatggacgggctggaggaattgcagtcggtggtcgtcatc
ggcgccaccaaccggccgaccctggtcgatccggcgctgctgcgccccggccgcttcgac
gaactcatctatgtgccggtgcccgaccaggccgggcgcaagcgcatcctggcgatccat
acgaagaagatgccgctggccggcgatgtcgatctcgaccaactcgcgcagcggacggag
cggttcaccggcgcggatctggaggatctgtcccgccgggctggcctcatcgcgctgcgc
cagtcgctgcgggtcgaagccgtcaccatggcccatttcgaggcggcgctggaggaaacc
cgcgcctcggtcacgccggaaatggagcgggaatatgagcagatccaggcgaccttgaag
cagagcgcgatgcaggtcgatccgatcggcttcatcgcgcccggcatgctgcgcgcccgc
gaacgctga
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