Sphingobium sp. WTD-1: N6H05_14515
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Entry
N6H05_14515 CDS
T10837
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spwt Sphingobium sp. WTD-1
Pathway
spwt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spwt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N6H05_14515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spwt03019
]
N6H05_14515
Enzymes [BR:
spwt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N6H05_14515
Messenger RNA biogenesis [BR:
spwt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N6H05_14515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ERCC3_RAD25_C
ChuX_HutX
DUF8086
Motif
Other DBs
NCBI-ProteinID:
WIA54277
LinkDB
All DBs
Position
2918648..2920078
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AA seq
476 aa
AA seq
DB search
MHFNELGLSEPIIKALTAKKYAEPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSL
DYFARNPKPTPIKGCRMLVLSPTRELAAQIAQSFRDYGRFLRLSVETVFGGVPVNKQIRA
LSAGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPRDR
QNLFFSATMPKEIEALAGQFLNDPVKVSVAPQSTTAERVRQQLTFVNQAEKQALLHIVLK
TEEIDRALIFTRTKHGADRVVRFLEGAGIQAFAIHGNKSQAQRTTALQAFRHGHCKLLVA
TDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPYLKAIE
RATKVKPEIVPLPENFLEAVRNLPKPAPQRKGPSQSPAQQAKRAEGQRRYQDGQKAQRGA
PDKARRGEGAHRGEGAHRGEGDGAGAKKNFRRRRGGGGGAVGTHKGAVQRTGAPRG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgcatttcaatgaacttggtctttccgagccgatcatcaaggcgcttaccgccaagaaa
tatgccgagccgacgccgatccagcaaaaggccattccggtcctgctggaaggccgcgac
ctgtgcggcatcgcccagaccggcaccggcaagaccgcagccttcgcgctgcccagcctc
gactatttcgcgcgcaatcccaagccgacgccgatcaagggctgtcgcatgctggtgctg
tcgccgacccgcgagctggccgcccagatcgcccagagtttccgcgactatggccgtttc
ctgcgcctgtcggtggaaaccgtgttcggcggcgtgccggtcaacaagcagatccgtgcc
ctgtcggccggcgtcgacatcgtcgtcgccacccccggccgcctgctcgacctgatcgac
cagcgcgccttcaccatcaaggatacggaaatcttcgtcctcgacgaagccgatcagatg
atggacatgggcttcatccaccccctgaagcgtattgccaagctgttgccgcgcgatcgc
cagaacctgttcttctcggccacgatgcccaaggagatcgaggcgctggccggccagttc
ctcaatgatccggtcaaggtcagcgtcgcgccgcagtcgaccacggccgagcgtgtccgc
cagcagctgaccttcgtcaaccaggcggagaagcaggcgctgctgcatatcgtgctgaag
accgaggagatcgaccgcgcgctgatctttacccgtaccaagcatggcgccgaccgcgtc
gtgcgtttcctggagggcgcgggcatccaggccttcgcgatccatggcaacaagagccag
gcgcagcgcaccaccgcgttgcaggcgttccgccatggccattgcaagctgctggtcgcg
accgacattgccgcgcgcggcatcgacgtgtcgggcgtgtcccacgtcatcaacttcgag
atcccgaacgtgccggaacaatatgtccaccggatcgggcgcacggcgcgtgccggcgcg
gacggcatcgccatcagcttcgtggcggatgatgaacggccttatctgaaggcgatcgag
cgggcgaccaaggtgaagcccgagatcgtgcccctgccggagaatttcctggaggccgtg
cgcaaccttcccaagcccgctccgcagcgcaaggggccgagccagagccctgcccagcag
gccaagcgcgccgaaggccagcgtcgttatcaggatggacagaaggcccagcgcggcgcg
cccgacaaggctcgccggggtgaaggggcccatcgtggcgagggtgcgcatcgtggcgaa
ggcgatggtgccggcgccaagaagaatttccgtcgtcgtcgtggtggcggcggtggcgcc
gtcggcacgcacaagggcgcggtccagcgcaccggcgcaccgcgcggctaa
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