Sphingobium sp. WTD-1: N6H05_20560
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Entry
N6H05_20560 CDS
T10837
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
spwt Sphingobium sp. WTD-1
Pathway
spwt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spwt00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
N6H05_20560 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spwt03021
]
N6H05_20560 (rpoD)
Transcription machinery [BR:
spwt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
N6H05_20560 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_29
DUF4168
TniQ
Motif
Other DBs
NCBI-ProteinID:
WIA55400
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All DBs
Position
4142676..4144715
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AA seq
679 aa
AA seq
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MATKANSKNGGMGDGEDGDAPLLDLNEASVKKLIARAKKRGYITYDELNDALPQDQMSSE
QIEDIMSALNEMGVNIVENEEASEDGDEQREREEADDADDDSSDDDGPKLVTEKKKETVD
RTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPTTFNAIIEWSTALN
NGEMQLREILDLDAMLSKDPAPENMEEGAEDDDGEISEKTAGPSFKEEEEPEEESADGDE
DEDGAPRARREEDEEEDNTLSLAQMEETLKPMALEKFATITEIFRAFSKAQESRMVAMAN
GESLSQKAEDSYHELREQLTAEVESVQFHQQKIEYLVDQLYAYNRRLTALGGQMLRLAER
HKVSRKDFLERYMGHELDDAWLEKVQGLDKKWAAFAAAEGRAVERIRNEVSEIAQATGMS
LSEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQ
GREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDA
AIQANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKA
LRKLKHPSRSRKMRSFLDQ
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaggcgaacagcaagaatggcgggatgggcgatggcgaggatggcgatgcc
cccctgctcgacctcaacgaagcgtccgtcaagaagctgatcgcccgcgcgaagaagcgc
ggctacatcacctatgacgaactgaacgatgccctgccgcaggaccagatgtcctccgag
cagatcgaggacatcatgtcggcgctcaacgagatgggcgtcaacatcgtcgagaatgaa
gaggcgagcgaagacggcgacgagcagcgcgagcgcgaggaagccgacgacgccgacgat
gattcgagcgacgatgacggccccaagctcgtcaccgagaagaagaaggaaacggtcgat
cgcaccgacgatcccgtgcgcatgtatctgcgcgagatgggcgccgtcgaactgctcagc
cgcgagggcgaaatcgccattgccaagcgcatcgaggccggccgcgacacgatgatcctg
ggtctgtgcgaaagcccgaccaccttcaacgcgatcatcgaatggtcgaccgcgctcaac
aatggcgagatgcagctgcgcgagatcctcgatctcgacgccatgctgtccaaggatcct
gctcctgaaaatatggaggaaggcgccgaggatgatgatggcgagatcagcgagaagacc
gctggccccagcttcaaggaagaggaagagccggaggaggaatccgccgacggcgacgag
gacgaggatggtgcgccccgcgcccgtcgcgaggaggacgaggaagaggacaacaccctg
tccctcgcccagatggaagagactttgaagccgatggcgctggagaagttcgcgaccatc
accgaaatcttccgcgccttctccaaggcccaggaatcgcgcatggtcgccatggccaat
ggcgaaagcctgagccagaaggccgaggacagctatcatgagctgcgcgaacagctgacc
gccgaggtcgagagcgtccagttccaccagcagaagatcgaatatctggtcgaccagctc
tatgcctataaccggcgcctgaccgcgctgggtggccagatgctgcgcctggccgagcgc
cacaaggtgagccgcaaggacttccttgagcgctatatgggccatgaactggacgatgcc
tggctggaaaaggtgcagggcctcgacaagaaatgggctgcttttgccgctgccgaaggc
cgcgcggtcgagcgcatccgcaacgaagtgagcgagatcgcccaggcgaccggcatgtcg
ctgagcgaattccgtcgcatcgtgaacatggtgcagaagggcgagcgtgaagcgcgcatc
gcgaagaaggaaatggtcgaggccaacctgcgcctcgtcatctccatcgcgaagaaatat
acgaaccgcggcctgcaattcctggaccttatccaggaaggcaatatcggcctgatgaag
gcggtcgacaagttcgaatatcgccgcggctacaagttcagcacctatgccacctggtgg
atccgtcaggcgatcacccgttcgatcgcggaccaggcgcggaccatccgcatcccggtc
cacatgatcgagacgatcaacaagctggtccgcaccagccgccagttcctgcacgagcag
ggccgcgaaccgaccccggaggagatggccgagcgcctgtccatgccgctggaaaaggtg
cgcaaggtgatgaagatcgccaaggagccgatctcgctcgaaacgccgatcggcgacgag
gaagacagccacctcggcgacttcatcgaggacaagaatgcgatcatcccggtggatgcc
gcgatccaggcgaacctgaaggaaacggtcacccgcgtccttgccagcctgaccccgcgc
gaggaacgcgtgctgcgcatgcgcttcggcatcggcatgaacaccgaccatacgctggag
gaagtgggccagcagttcagcgtgacccgcgagcgcatccgccagatcgaggcgaaggcg
ctgcgcaagctgaagcaccccagccgcagccgcaagatgcgcagcttcctcgaccagtaa
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