Sphingobium sp. WTD-1: N6H05_21345
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Entry
N6H05_21345 CDS
T10837
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
spwt Sphingobium sp. WTD-1
Brite
KEGG Orthology (KO) [BR:
spwt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spwt03009
]
N6H05_21345 (rimO)
Enzymes [BR:
spwt01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
N6H05_21345 (rimO)
Ribosome biogenesis [BR:
spwt03009
]
Prokaryotic type
ribosomal protein modification factors
N6H05_21345 (rimO)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
WIA55541
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All DBs
Position
4294513..4295895
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AA seq
460 aa
AA seq
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MCAPIMATKIPDAPKIGMVSLGCPKNLVDSERILTKLRSDGYQMSADYAGADVVLVNTCG
FLDSAKEESLEAIGEAMAENGRVIVTGCMGDEADVIRAKFPQVLAVTGAHQYEQVVNAVH
DASPPIPNAFVDLVPEGGLKLTPRHYSYLKISEGCNHRCSFCIIPSIRGDLVSRRIDAVL
REAEKLVAAGTKELLVISQDTSAYGVDTRHEPRMWKGREVRAHMTDMARELGQLRTADGV
APWVRLHYVYPYPHVDHVIPLMAEGLLTPYLDIPFQHASPSVLKAMKRPANEAKVLDRIR
KWRDICPDIAIRSSFVVGFPGETEADFQYLLDWLDEAQLDRVGAFRFEPVEGAAANDLPG
AVPEEVKEERYQRIMEKTAAISAAKLQAKVGRVMPVIIDEVGEPDEEDGSIGATARSQAD
APEIDGNVFLRDVGEGRKAGDMFDVLIEDADDHDLYGVPA
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgcgccgatcatggcaaccaaaatcccagacgcgccgaagatcggcatggtttcg
ctcggctgtccgaagaacctggtcgactccgaacgtatcctgaccaagctgcgttccgac
ggctatcagatgtccgccgactatgccggcgccgacgtcgtgctggtcaacacctgcggc
ttcctcgattccgccaaggaagaatcgctcgaagcgatcggcgaggccatggctgaaaat
ggccgagtcatcgtcaccggctgcatgggcgacgaggcggacgtgatccgcgcgaaattc
ccgcaggtcctggccgtcaccggcgcgcatcaatatgagcaggtggtcaatgcggtgcat
gacgcatcgccgcccatccccaacgcctttgtcgacctggtgcccgaaggcgggctgaag
ctcaccccgcgccattacagctatctgaagatttcagagggctgcaaccatcgttgctcc
ttctgcatcatcccctcgatccgcggcgacctggtgtcgcgccggatcgacgcggtgctg
cgcgaggcggaaaagctggtcgcggccggcaccaaggaattgctggtcatcagccaggat
acctcggcctatggcgtcgacacccgccacgagccgcgcatgtggaagggccgcgaagtc
cgcgcccatatgaccgacatggcgcgcgaactgggccagctgcgcacggcggacggcgtc
gcgccctgggtccgcctccactatgtctatccctatccccatgtcgatcatgtcatcccg
ctgatggccgaagggctgctgacgccctatctcgacattcccttccagcatgcttcgccg
agcgtattgaaggcgatgaagcgcccggccaatgaagccaaggtgctcgaccgcatccgc
aagtggcgtgacatctgcccagacatcgcgatccgctccagcttcgtcgtcggcttcccc
ggcgagaccgaggcggacttccagtatctgctcgactggctggacgaggcgcagctcgac
cgcgtcggcgccttccgcttcgagccggtcgagggcgcagccgccaatgacctgcccggc
gcggtgcccgaagaggtcaaggaagaacgctatcagcggatcatggaaaagaccgccgcg
atcagcgccgccaagctgcaggcgaaggtcggccgggtcatgccggtgatcatcgacgag
gtcggcgagccggacgaggaagatggcagcatcggcgcgaccgcgcgcagccaggccgac
gcgccggaaatcgacggcaatgtcttcctgcgcgacgtcggcgaaggccgcaaggcgggc
gacatgttcgacgtgctgatcgaggatgccgacgatcacgacctgtatggcgtgccggcc
tga
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