Sphingobium sp. WTD-1: N6H05_21750
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Entry
N6H05_21750 CDS
T10837
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spwt Sphingobium sp. WTD-1
Pathway
spwt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spwt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N6H05_21750 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spwt03019
]
N6H05_21750 (pnp)
03016 Transfer RNA biogenesis [BR:
spwt03016
]
N6H05_21750 (pnp)
Enzymes [BR:
spwt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
N6H05_21750 (pnp)
Messenger RNA biogenesis [BR:
spwt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
N6H05_21750 (pnp)
Transfer RNA biogenesis [BR:
spwt03016
]
Prokaryotic type
tRNA degradation factors
N6H05_21750 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_RRP5
KH-I_KHDC4-BBP
S1_2
BioW
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
WIA55618
LinkDB
All DBs
Position
complement(4379014..4381329)
Genome browser
AA seq
771 aa
AA seq
DB search
MFDVKKVSIELAGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVMSF
DGESEPDIVAMIAASAALTLSGVPFMGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVA
ATSNAVMMVESEAKELSEDVMLGAVLFAHEASKKVVDAIIQLAEKAAKDPWEMAKGDDLG
ALKGKLKDLIGGDIAAAYKLTDKSARSNALNEARAKAKAMFTEDGLDAQTVMAGIKLTKK
LEAEIVRGAILKDGQRIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTK
DAEQMIDGLTGLHYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTKD
EFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGSDFAVIS
DILGDEDHLGDMDFKVAGTEAGITTMQMDIKVAGITQEIFETALRQAKEGRAHILGEMNK
ALSSTRTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGIIKISS
SDTAQIEAAKKWILGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERV
EKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGEELEDTRPAREPREPRGDRGDR
GDRGRGPRRDGGDRGGRGGDRGPRRDRGPRSEGKGDDDGSNAGLPDFLTQD
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatgtaaagaaagtttcgatcgagctggccggcaagacgctgaccctcgaaacc
ggccggatcgcgcgccaggccgacgccgccgtgctggcaacctatggcgaaaccgtggtg
ctgtgcgccgtgaccgccgccaagtcggtgaaggaaggccaggacttcttcccgctgacc
gttcactatcaggaaaaatattcggccgccggccgcattccgggtggcttcttcaagcgt
gagcgtggcgccaccgagaaggaaaccctggtttcgcgcctgatcgaccgtccgatccgc
ccgctcttccccgaaggcttctacaacgaaatcaacgtcattgcccaggtgatgtcgttc
gatggcgagagcgagcccgacatcgtcgcgatgatcgctgcttccgctgccctgaccctg
tcgggcgtgcccttcatgggcccgatcggcgctgcccgcgtcggttacaaggatggcgaa
tatcagctgaacccgtcgctggacgaagtgaagaccggcgaactcgacctggtcgtcgct
gccaccagcaacgccgtgatgatggtcgaatccgaagccaaggaactgtcggaagacgtc
atgctcggcgccgtcctgttcgcccatgaagcgagcaagaaggtcgtcgacgcgatcatc
cagctggccgaaaaggctgccaaggatccgtgggaaatggccaagggcgacgatctcggc
gcgctgaagggcaagctcaaggatctgatcggtggcgacatcgccgctgcctacaagctg
accgacaagtcggcccgctcgaacgccctgaacgaagcccgcgccaaggcgaaggcgatg
ttcacggaagacggcctcgacgcccagaccgtgatggccggcatcaagctgaccaagaag
ctggaagccgagatcgtccgtggcgccatcctgaaggacggccagcgcatcgacggccgc
accaccacccagatccgtccgatcgaggcgatggtcggcttcctgccgcgcacccatggt
tcggccctgttcacccgtggcgagacgcaggcgatctgcaccaccacgctgggcaccaag
gacgccgagcagatgatcgacggcctcaccggcctgcactatgaaaacttcatgctgcac
tacaacttcccgccctattcggtcggtgaagtgggccgcttcggtgcgccgggtcgtcgt
gaagtcggccatggcaagctcgcctggcgtgcgctgcacccggtgctgccgaccaaggac
gaattcccctacaccatccgcgttctctcggacatcaccgagtcgaacggttcctcgtcg
atggccaccgtctgcggtggttcgctctcgatgatggacgcgggcgttccgctcaagcgt
ccggtgtcgggcatcgccatgggcctgatcctggaaggcagcgacttcgccgtcatctcg
gacatcctgggcgacgaggatcacctcggcgacatggacttcaaggtcgctggcacggaa
gccggcatcaccaccatgcagatggacatcaaggttgccggcatcacgcaggaaatcttc
gagaccgccctgcgccaggccaaggaaggtcgcgcccacatcctgggtgagatgaacaag
gccctgtcctcgacccgcaccgaactctcggcgcacgctccgcgcatcgagacgatccag
atcgataagtcgaagatccgtgacgtcatcggcaccggcggcaaggtcatccgcgagatc
gtcgcggaaaccggcgccaaggtcgacatcgacgacgaaggcatcatcaagatttcgtcg
tccgacactgcccagatcgaagctgccaagaagtggattctcggcatcgtcgaggaagcg
gaagtcggcaagatctacaccggcaaggtcgtcaacatcgtcgacttcggtgcgttcgtg
aacttcatgggtggcaaggacggcctcgtccacgtcagcgaaatgaagaatgagcgcgtc
gaaaagccgaccgacgtcgtgtcggaaggccaggaagtgaaggtcaaggttctcgagatc
gatccgcgcggcaaggttcgcctgtcgatgcgcgtcgtcgatcaggaaaccggcgaggaa
ctggaagacacccgtccggcccgcgaaccgcgtgaaccgcgcggtgaccgtggtgatcgc
ggcgatcgtggtcgtggcccgcgccgtgacggcggcgaccgtggcggccgtggcggcgat
cgtggcccgcgccgcgaccgtggcccgcgcagcgaaggcaagggcgacgatgacggctcc
aacgccggcctgcccgacttcctgacccaggactga
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