Streptococcus pneumoniae G54 (serotype 19F): SPG_0006
Help
Entry
SPG_0006 CDS
T00734
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spx
Streptococcus pneumoniae G54 (serotype 19F)
Pathway
spx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SPG_0006 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spx03400
]
SPG_0006 (mfd)
Enzymes [BR:
spx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPG_0006 (mfd)
DNA repair and recombination proteins [BR:
spx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SPG_0006 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
MFD_D3
AAA_22
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ACF55220
LinkDB
All DBs
Position
4952..8461
Genome browser
AA seq
1169 aa
AA seq
DB search
MVTLLDLFSENDQIKKWHQNLTDKKRQLILGLSTSTKALAIASSLEKEDRIVLLTSTYGE
AEGLVSDLISILGEELVYPFLVDDAPMVEFLMSSQEKIISRVEALRFLTDSSKKGILVCN
IAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDIL
DIFEMSQLEPCRIEFFGDEIDGIRSFEVETQLSKENKIELTIFPASDMLLREKDYQRGQS
ALEKQISKTLSPILKSYLEEILSSFHQKQSHADSRKFLSLCYDKTWTVFDYIEKDTPIFF
DDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQYFSDIEQIYKKQSPVTFFSNLQKGL
GNLKFDKIYQFNQYPMQEFFNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEY
QIKLDSRDKTSICKESVNLIEGNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQHVSNA
ERLKDYNELEKGDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGDQISIPVEQIHL
LSKYISSDGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFAFSADDD
DQDAFDDAFPYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVND
HKQVVILVPTTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILI
GTHRVLSKDVVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSML
GIRDLSVIETPPTNRYPVQTYVLEKNDSVIRDAVLREMERGGQVYYLYNKVDTIVQKVSE
LQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENA
DHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMR
DLSIRGAGNLLGKSQSGFIDSVGFELYSQLLEEAIAKRNGNANANTRTKGNAELVLQIDA
YLPDTYISDQRHKIEIYKKIRQIDNRVNYEELQEELIDRFGEYPDVVAYLLEIGLVKSYL
DKVFVQRVERKDNKITIQFEKVTQRLFLAQDYFKALSVTNLKAGIAENKGLMELVFDVQN
KKDYEILEGLLIFGESLLEIKESKEENSI
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atggtgaccttattagatttattctcagaaaatgatcagattaaaaaatggcatcaaaat
ttaacagataagaaaagacaactaatacttggtttatcaacatctactaaggctcttgca
attgcaagcagtttagaaaaagaagataggattgtgttattgacgtcaacttatggagaa
gcagaaggacttgttagtgatcttatctctatcttgggtgaggaactcgtctatccattt
ttggtagatgatgctcctatggtggagtttttgatgtcttcacaggaaaaaattatttca
cgggttgaagccttgcgttttttgactgattcatctaagaaagggattttagtttgtaat
atcgcagcaagtcgattgattttaccgtctcccaatgcattcaaagatagtattgtaaaa
atctcagttggtgaagaatatgatcaacacgcgtttatccatcagttaaaggaaaatggc
tatcgaaaagttactcaagtacaaactcagggcgaatttagtcttcgaggagatatttta
gatatttttgaaatgtcccagttagaaccttgtcgaattgagttttttggtgatgaaatt
gatggtatcaggtcatttgaagtagaaacacaattatcgaaagaaaataagatagaactc
actatctttccagctagtgatatgcttttgagagaaaaggattatcaacgaggacagtca
gctttagaaaaacaaatttcaaaaactttatcacctattttgaaatcatacctagaagaa
attctttcaagttttcatcaaaagcaaagtcatgcagattctcggaagtttttatctttg
tgctatgataagacatggactgtctttgattatattgaaaaagatactccaatattcttt
gatgattatcaaaaattgatgaatcagtatgaagtctttgaaagagaattagcgcagtac
tttacagaagaattacagaatagtaaagcattttctgatatgcagtatttttctgatatt
gaacaaatctataaaaaacaaagtccagtgacctttttctctaatcttcaaaagggttta
ggaaatctcaaatttgacaaaatttatcaattcaatcaatatcctatgcaggaatttttc
aatcagttttcttttctaaaagaagaaattgaacgatataaaaaaatggattacaccatt
attctgcagtctagcaattcaatgggaagtaaaacattggaggatatgttagaggaatat
cagattaaattggattctagagataagacaagtatctgtaaagaatctgtaaacttaata
gagggtaatctcagacatggttttcattttgtagatgaaaagattttattgataactgaa
catgagatttttcaaaagaaattaaagcgtcgttttcgaagacaacatgtttcaaatgca
gagagattaaaagattacaatgagcttgaaaaaggggactatgttgtccatcatatccat
gggattggtcaatatctaggaattgaaaccattgaaatcaagggaattcatcgcgattat
gtcagtgtccaataccaaaatggtgatcaaatttctatccccgtggaacagattcatcta
ctgtccaaatatatttcaagtgatggtaaagctccaaaactcaataaattaaatgacggt
cattttaaaaaggccaagcaaaaggttaagaaccaggtagaggatatagctgatgattta
atcaaactctactctgaacgtagtcagttgaagggttttgctttctcagctgatgatgat
gatcaagatgcctttgatgatgctttcccttatgttgaaacggatgatcaacttcgtagt
attgaggaaatcaagagggatatgcaggcttctcagccaatggaccgacttttagttggg
gatgttggttttggaaagactgaagttgctatgcgtgcagcctttaaagcagtcaatgat
cacaaacaggttgtcattctagttccgacgacggttttagcgcaacagcactatacgaat
tttaaggaacgattccaaaattttgcagttaatgttgatgtgttgagtcgctttagaagt
aaaaaagagcagactgcaacacttgaaaaattgaaaaacggtcaagtcgatattttgatt
ggaacacatcgtgttttgtcaaaagatgttgtgtttgctgatttgggcttgatgattatt
gatgaggaacagcgatttggtgtcaagcataaggaaactttgaaagaactgaagaaacaa
gtggatgtcctaaccttgaccgctacgccaatccctcgtaccctccatatgtctatgctg
ggaatcagagatttgtctgttattgaaactccgccgactaatcgctatcctgttcagacc
tatgttttggaaaagaatgatagtgtcattcgtgatgctgtcttgcgtgaaatggagcgt
ggaggtcaagtttactatctttacaacaaagttgacacaattgttcagaaggtttcagaa
ttacaggagttgattccggaggcttcgattggatatgttcatggtcgaatgagtgaagtc
cagttggaaaatactctattagactttattgagggacaatacgatatcttggtgacgact
actattattgagacaggggtggacattccaaatgctaatactttatttattgaaaatgcg
gaccatatgggcttgtcaaccttatatcagttaagaggaagagtcggtcgtagtaatcgt
attgcttatgcttatctcatgtatcgtccagaaaaatcaatcagtgaagtctctgaaaag
agattagaagcgattaaaggatttacagaattgggctctggctttaagattgcaatgcga
gatctttcgattcgtggagcaggaaatcttttaggaaaatcccagtctggtttcattgat
tctgttggttttgaattgtattcgcagttattagaggaagctattgctaaacgaaacggt
aatgctaacgctaacacaagaaccaaagggaatgctgagttggttttgcaaattgatgcc
tatcttcctgatacttatatttctgatcaacgacataagattgaaatttacaagaaaatt
cgtcaaattgacaaccgtgtcaattatgaagagttacaagaggagttgatagaccgtttt
ggagaatacccagatgtagtagcctatcttttagagattggtttggttaaatcatacttg
gacaaggtctttgttcaacgtgtggaaagaaaagataataaaattacaattcaatttgaa
aaagtcactcaacgactgtttttagctcaagattattttaaagctttatccgtaacgaac
ttaaaagcaggcatcgctgagaataagggattaatggagcttgtatttgatgtccaaaat
aagaaagattatgaaattttagaaggtctgctgatttttggagaaagtttattagagata
aaagagtctaaggaagaaaattccatttga
DBGET
integrated database retrieval system
