Sphingopyxis sp. YF1: EAO27_03540
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Entry
EAO27_03540 CDS
T10727
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spyf Sphingopyxis sp. YF1
Pathway
spyf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spyf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EAO27_03540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spyf03019
]
EAO27_03540
Enzymes [BR:
spyf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EAO27_03540
Messenger RNA biogenesis [BR:
spyf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EAO27_03540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UNU41886
LinkDB
All DBs
Position
726237..727637
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AA seq
466 aa
AA seq
DB search
MTTFNDFGLHADINRALAAKDYTQPTPIQQQAIPPLMKGRDLCGIAQTGTGKTAGFSLPS
IHHLITYPHKTNPRSCRMLVLAPTRELAAQIAQSCRDYGRFTKLRVSTVFGGVPINKQIR
DLAQGVEILVATPGRLLDLIDQRALRLDDVEIFVLDEADQMMDMGFIHSLRRIAKLLPSR
RQNLFFSATMPKEIAHLAEQFLEDPVTVSVTPQATTAEKIRQFSTFVEQKEKQALLHHVI
KTSDIDRALIFTRTKHGADRVVRHLKGAGIEAFAIHGNKSQAQRTTALQAFRSGQVRLLV
ATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGAEGIAISFVAPDERTYLRDV
ERVTRTKSEPMPLPEGFNEMVRNLPKPVQPPRDTGSRGRNPQRQRDDALAGRGEGNRGNG
QPRGDRGPRREGAGAAGADGQPQRKRRFRPRGGKVGAHKGAVKRVG
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgacgactttcaacgactttggcctgcacgccgacatcaaccgcgcgcttgccgccaag
gattatacccagccgaccccgatccagcagcaggcgatcccgccgctgatgaagggccgc
gacctgtgcggcatcgcgcagaccggtaccggcaagaccgcgggcttttcgctgccctcg
atccatcacctgatcacctatccgcacaagaccaacccgcgcagctgccgcatgctcgtg
ctcgcgccgacgcgcgaactcgccgcgcagattgcgcagagctgccgcgattacggccgc
ttcaccaagctgcgcgtctcgaccgtcttcggcggcgtgccgatcaacaagcagatccgc
gaccttgcgcagggcgtcgaaatcctcgtcgccaccccgggccgcctgctcgacctgatc
gaccagcgtgcgctgcgcctcgacgatgtcgaaatcttcgtcctcgacgaagccgaccag
atgatggacatgggcttcatccactcgctgcgccgcatcgccaagctgctgccgtcgcgc
cgccagaacctcttcttctcggcgacgatgccgaaggaaatcgcgcacctcgccgaacag
ttccttgaggatccggtgaccgtgtcggtgacgccgcaggcgaccaccgccgaaaagatc
cgccaattctcgaccttcgtcgagcagaaggaaaagcaggcgctgctccatcacgtcatc
aagacgtcggacatcgaccgcgcgctgatctttacccggaccaagcatggcgccgaccgc
gtcgtgcgccacctgaagggtgcgggcatcgaagccttcgcgatccatggcaacaagagc
caggcgcagcgcaccaccgcgctccaggccttccgctcggggcaggtgcgcctgctcgtc
gcgaccgacatcgcggcgcgcggcatcgacgtttcgggggtcagccatgtgatcaacttc
gaaatcccgaacgtccccgaacaatatgtccaccgcatcggccgcactgcgcgcgccggc
gccgagggcatcgcgatcagctttgtcgcccccgacgagcgtacctatctgcgcgacgtc
gagcgcgtcacgcggaccaaatccgaaccgatgccgctgccggaggggttcaacgaaatg
gtccgcaacctgcccaagccggtgcagccgccgcgcgatacgggcagcaggggccgcaac
ccgcagcgccagcgcgacgatgcgctggccggacgcggtgagggcaatcgtggcaacggg
cagccgcgcggtgatcgtggtccgcgccgcgaaggtgccggcgcggcgggggccgatggt
cagccgcagcgcaagcgccgcttccgcccgcgcggcggcaaggtcggtgcgcacaagggt
gcggtcaagcgcgtcggttga
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