Sphingopyxis sp. YF1: EAO27_05700
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Entry
EAO27_05700 CDS
T10727
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
spyf Sphingopyxis sp. YF1
Brite
KEGG Orthology (KO) [BR:
spyf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spyf03032
]
EAO27_05700 (topA)
03400 DNA repair and recombination proteins [BR:
spyf03400
]
EAO27_05700 (topA)
Enzymes [BR:
spyf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
EAO27_05700 (topA)
DNA replication proteins [BR:
spyf03032
]
Prokaryotic type
DNA Topoisomerases
EAO27_05700 (topA)
DNA repair and recombination proteins [BR:
spyf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
EAO27_05700 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UNU42257
LinkDB
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Position
1180045..1182636
Genome browser
AA seq
863 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGRDFKVLASYGHVRDLPPKDGSVDPDDGFAMQWQLYPDKAK
RLKEIQDAAKGADRLILATDPDREGEAISWHVQELLRAKKALPASVDRVTFNAITKQAVT
DAMAHPRELDTDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVSLRLIVERE
REIEAFVAQQYWSITGLFEMSGTPFRARLARWRGDKIERLSITSEADARAAEADVKAGHF
TVEQVETKPLTRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQSLYEDGAITYMRTDGVQ
MDGSAISAARKAIATRYDGGYVPDQPRQYQTKAKNAQEAHEAIRPTDFSKDKAGSGDHGR
LYELIWKRALASQMASARLERTSIDLSDGTGKTMLRATGQVVKFPGFLALYDESRDEAGD
DDDARLLPAMAKGDAPAKTGFEVESHETQPPPRYSEASLVKKMEELGIGRPSTYASILQV
LKDRAYVTVEKNRFIPEESGRLLTAFLERFFTRYVEYDFTAGLEEELDDVSGGRAQWQAV
LERFWRDFKPRTGEVMDQKPSEITAALDEFLGPYLFPDKGDGTDPRLCPNCGTGRLALRG
GKFGPFIACSNYPDCKFTRKFAQPGGNGEADTGPETLGTDPESGLEVTRRSGRFGPYIQL
GEGKEAKRSSIPKDIPGEDFDLDYALRLLSLPREVGVHPESGKPIMAGLGRYGPYLLHDG
KYAKLTGTAEIFDIGMNAAVVRIAEAAAGGGRGRAKVEPLKTFGAHPTSGGDMKLMAGRF
GPYVTDGTTNATLPKSIEPDALTEEEAIALIDARAAKGPAKGKKKAAPKKAAAKKAPAKK
APAKKKAPAKKKAATDEAPAADE
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgcaattggttattgtggaatcgcccgccaaggcgaagacgatcgagaagtatctcggc
cgcgatttcaaggtgttggccagctatggccatgtccgcgacctgccgcccaaggacggg
tcggtcgatcccgacgacggctttgcgatgcagtggcagctgtaccccgacaaggcgaag
cggctgaaggaaatccaggatgccgccaagggcgccgaccgtctgatcctcgcgaccgac
cctgatcgcgagggcgaggcgatcagctggcacgtgcaggaattgttgcgcgcgaaaaag
gcgctgccggcctcggtcgaccgcgtcaccttcaacgcgatcaccaaacaggcggtcacc
gacgcgatggcgcatccgcgcgagctcgataccgacctgatcgacgcctatcgcgcgcgc
cgcgcgctcgactatctggtcggcttcactttgtcgccggtgctgtggcgcaagctgccc
ggcgccaagtcggcggggcgcgtccagtcggtgtcgctgcgcctgatcgtcgagcgcgag
cgcgagatcgaggcgttcgtcgcccagcaatattggtcgatcaccggcctgttcgaaatg
tcgggcacgccgttcagggcgcgcctcgcgcgctggcgcggcgacaagatcgagcggctg
tcgatcaccagcgaagccgacgcccgcgccgccgaggctgatgtgaaggcggggcatttc
accgtcgaacaggtcgagaccaaaccgctgacgcgcaacccgccgccgccgttcacgacc
tcgacgctgcaacaggaggccgcgcgcaaactgggcttctcggcgagccacacgatgcgc
atcgcgcagagcctctacgaggacggcgcgatcacctacatgcgtaccgacggcgtccag
atggacggcagcgcgatcagcgccgcgcgcaaggcgatcgcgacgcgctacgacggcggc
tatgtccccgaccagccgcgccagtaccagaccaaggcgaagaatgcgcaggaagcgcac
gaggcgatccgtccgaccgatttttcgaaggacaaggcgggcagcggcgaccatggccgg
ctgtacgaactgatctggaaacgcgcgctggcaagccagatggcgtcggcgcggctcgaa
cgcaccagcatcgacctcagcgacggcaccggcaagactatgctgcgcgcgaccgggcag
gtggtcaaattccccggcttcctcgccctctatgacgaaagccgcgacgaggcgggcgac
gacgacgatgcgcgcctgctgcccgcgatggcaaagggtgacgctcctgcgaagacgggg
ttcgaggtcgaaagccacgaaacccagccgccgccccgctattcggaggcgagccttgtc
aagaagatggaggaactcggcatcgggcgtccgtcgacctacgcctcgatcctccaggtg
ctcaaggaccgcgcctatgtgacggtcgaaaagaaccgcttcattcccgaagagagcggg
cgcctgctcacggcattcctcgaacgcttcttcacccgctacgtcgaatatgatttcacc
gcggggctcgaagaggaactcgacgacgtgtcgggcggccgcgcgcagtggcaggcggtg
ctcgaacgcttctggcgcgacttcaagccgcgcaccggcgaggtgatggaccagaagccg
tcggagatcaccgcggcgctcgacgaattcctcggcccctatctcttccccgacaagggc
gacgggaccgatccgcgcctctgccccaattgcggcaccgggcggctcgcgctgcgcggc
ggcaagttcgggccgttcatcgcgtgcagcaactatcccgactgcaagttcacgcgcaaa
ttcgcgcagccgggcggcaatggcgaggccgacaccggccccgaaacgctgggcaccgat
cccgaaagcgggctggaagtgaccaggcgcagcgggcgcttcggcccctatatccagctc
ggcgagggcaaggaggccaagcgttcgtcgatccccaaggacattccgggcgaggatttc
gacctcgattatgcgctgcggctcttgagcctgccgcgcgaggtcggggtgcatcccgaa
agcggcaaaccgatcatggcagggctgggacgctacggcccctacctgctccacgacggc
aaatatgccaagctgacgggcaccgccgagatcttcgacatcggcatgaacgccgcggtc
gtccgcatcgccgaagccgcggcgggcggcggacgcgggcgggccaaggtcgagccgctc
aagacgttcggcgcgcatccgacgagcggcggcgacatgaagctgatggcggggcgtttc
ggcccctatgtcaccgatggcaccaccaacgccaccttgcccaagtcgatcgaacccgac
gcgctgaccgaagaggaagcgatcgcgctgatcgacgcgcgcgctgccaagggccccgca
aagggcaagaagaaggcggcgcccaagaaggcggcggcgaagaaggcgcccgccaaaaag
gccccggcaaagaaaaaggcgcccgcgaagaaaaaggcggcgacggacgaagcgccggcc
gcagacgaataa
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