Sphingopyxis sp. YF1: EAO27_06415
Help
Entry
EAO27_06415 CDS
T10727
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
spyf Sphingopyxis sp. YF1
Brite
KEGG Orthology (KO) [BR:
spyf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spyf03019
]
EAO27_06415 (hrpB)
Enzymes [BR:
spyf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EAO27_06415 (hrpB)
Messenger RNA biogenesis [BR:
spyf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EAO27_06415 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
HA2_N
Cas3-like_C_2
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
UNU42383
LinkDB
All DBs
Position
1338685..1341150
Genome browser
AA seq
821 aa
AA seq
DB search
MTLHLPIDAVLPDIMAALTLKPNAVVVAPPGAGKTTRVAPAILDQPWCKGAVWLLSPRRL
AARAAAERISEEMGTPVGGLVGYATRLDSKQSNATRLLVMTPGLFRNRILDDPELAGVSA
VLFDEVHERSLDGDFALALAIDAQQGLRDDLRLVAMSATLDGARFGALLGNAPVVKSEGK
SWPLDIRHIGRRAEDRLEASIVGAVRQAMGDEAEGDMLAFLPGVAEIERAASAVEDARLP
LVVHRLHGQIDPAVQRKALVRDPGGGRKLILATSIAETSLTIDGVRIVIDAGLSRRPRFD
KAAGIARLVTERASQASATQRAGRAARQGPGAAYRLWEAPATAGMPPFDPPEIHENDLMP
VVLDCASWGIVDPRQLGWLDPPSPAAVAEAKTRLQAIGALAADGRITAHGKALASIPLPV
PLAHMLIEAAATGEAELAARLAVLLTEPGLGGRGLDVEARLQRWRGSRNDRAEGAWRLAR
RLAALAGKRAEGVEPLTARSIGGWIATAWPDRVARQRAGQRGDYLSVGGRAYRIDPADPL
AGSEWIAIADAQGHAAGVRILAAAPIAQAEVEAIFADRIVAHSASRYDAAADRVDHRRER
RLGAIALASGKAGPGEGPDDDVALRLAAVREKGLGLIGWGAASQALRLRASFAGIDTLST
AALSDSLDIWLAPLLGKCRGLRDIGDGRLADALAGLLDWPARQSLEKRAPSEYLTPAGSR
HAIDYGAEGGPQVAVRVQELFGLARHPVVGEPPVPLILSLTSPAHRPIQTTRDIASFWSG
SWHDVAREMRGRYPKHPWPDDPANARPTFLTKAAQARRDGS
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgaccctgcacctgccgatcgacgccgtgctgcccgatatcatggcggcgctgacgctg
aagcccaatgcggtcgtcgtcgcgccgccgggcgcgggcaagacgacgcgcgtcgctccg
gcgatcctcgaccagccgtggtgcaagggcgcggtgtggctgctgtcgccgcgccgtctg
gctgcgcgcgccgccgccgagcggatctcggaagaaatgggcacgccggtcggcggcctg
gtcggctatgcgacgcggctcgacagcaagcagtcgaacgcgacccggttgctggtgatg
acccccggcctgttccgcaaccgcatcctcgacgaccccgaactggcgggcgtgtcggcg
gtgctgttcgacgaagtccacgaacgcagcctcgacggcgatttcgcgctcgcgctggcg
atcgacgcgcaacaggggctgcgcgacgacttgcgcctcgtcgccatgtcggcgacgctc
gacggcgcgcgcttcggcgcgctgctcggcaacgcgccggtggtgaagagcgagggcaag
agctggccgctcgacatccgccatatcggccgccgcgccgaggaccggctggaggcgagc
atcgtcggagcggtgcggcaggcgatgggcgacgaagccgagggagacatgctcgccttt
ctgcccggcgtcgccgagatcgagcgcgccgcgagtgcggtcgaggacgcgcgactgccg
ctcgtcgtccaccggctgcacgggcagatcgaccctgcggtccagcgcaaggcgctcgtc
cgcgatcccggcggcgggcgcaagctgatcctcgcgacgagcatcgccgaaaccagcctc
accatcgacggggtgcgtatcgtgatcgatgccggcctgtcgcgccggccgcgcttcgac
aaggcggcggggatcgcacggctggttaccgaacgcgcgagccaggcgtcggcgacgcag
cgcgccgggcgcgcggcgcggcaggggcccggggccgcctatcgcctgtgggaggcaccc
gcgaccgcgggcatgccgccgttcgatccgcccgagattcacgagaatgacctgatgccg
gtcgtgctcgactgcgccagctggggcatcgtcgatccgcgccagctcggctggctcgac
ccgccgtccccggcggcggttgccgaggcgaagacgcggttgcaggcgatcggcgcgctg
gccgccgacggtcgcatcacggcacacggcaaggcgctggcgtcgatcccgctgcccgtg
ccgctcgcgcatatgctgatcgaagcggcggcgacgggcgaagccgaactggctgcacgg
ctcgcggtgctgctcaccgaaccgggcctcggcggacgcgggctcgatgtcgaggcgcgg
ctccagcgctggcgcggcagtcgcaacgatcgcgccgaaggggcctggcggctcgcccgc
cgcctggcggccctggccgggaagcgcgccgaaggcgtggagccgctgaccgctcgatcg
atcggcggctggatcgcgaccgcctggcccgaccgcgtggcgcgccagcgcgcggggcag
cgcggcgactatctgagcgtcggcgggcgcgcctatcgcatcgaccccgccgatccactc
gcaggcagcgagtggatcgccatcgccgatgcgcaggggcatgcggcgggggtgcgcatc
cttgccgccgcgccgatcgcgcaggccgaggtggaggcgatttttgccgaccgcatcgtc
gcccactcggcgagccgctacgatgccgccgccgaccgcgtcgatcatcgccgcgaacgg
cggctcggcgcgatcgcgctcgccagcggcaaggcggggccgggcgagggccccgacgac
gatgtcgcgctgcggctcgcggcggtgcgcgagaagggactgggactgatcggctggggg
gcggcatcgcaggcgctgcggttgcgcgcgtcctttgccggcatcgatacgctgtcgacc
gcggcgttgtccgacagtctcgacatctggctggcgccgctgctcggcaagtgccgcggc
ctgcgcgacatcggcgacggccggctcgccgacgcgctggcggggctgctcgactggccc
gcgcggcaatcgctcgaaaagcgggcgccgtcggagtatctgacccccgcgggcagccgc
catgcgatcgattacggcgccgaaggcgggccgcaggtcgcggtgcgggtgcaggagctt
ttcggtcttgcacggcacccggtggtgggcgaaccgccggtgccgctcatcctgtcgctg
acatcccccgcgcaccggccgatccagacgacgcgcgacatcgcgagtttctggagcgga
agctggcacgacgtggcgcgcgagatgcgcggacgctatccgaagcatccgtggcccgac
gaccccgcgaacgcccggccgacctttttgaccaaggcggcgcaggcgcggcgcgacggg
tcatga
DBGET
integrated database retrieval system
