Sphingopyxis sp. YF1: EAO27_06560
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Entry
EAO27_06560 CDS
T10727
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
spyf Sphingopyxis sp. YF1
Pathway
spyf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spyf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EAO27_06560 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spyf03400
]
EAO27_06560 (uvrA)
DNA repair and recombination proteins [BR:
spyf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EAO27_06560 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EAO27_06560 (uvrA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
nSTAND1
AAA_29
DnaJ_CXXCXGXG
AAA_25
AAA_21
TylF
CA109-like
Motif
Other DBs
NCBI-ProteinID:
UNU42411
LinkDB
All DBs
Position
complement(1367025..1369925)
Genome browser
AA seq
966 aa
AA seq
DB search
MSLTHISVRGAREHNLKGIDVDLPRDALVVITGLSGSGKSSLAFDTIYAEGQRRYVESLS
AYARQFLEMMQKPDVEHIDGLSPAISIEQKTTSRNPRSTVATVTEIYDYMRLLWARVGIP
YSPATGEPISAQTVSQMVDRVMELPEGTRAYLLAPVVRGRKGEYKKELAQWQKDGFTRVR
IDGEFYEIGDAPTLDKKYKHDIEVVVDRIAVREGLETRLADSFETALKLAEGLAYVDLAD
GPVPGREEEDTGGAMKGAGIPANRLIFSEKFACPVSGFTIAEIEPRLFSFNAPQGACPAC
DGLGERQEFDPDLVVPNHALSLKKGAVVPWAKSNPPSPYYMQVLESLGKAYGFDMTTPWQ
DLPGEVQLIILYGTGGKPVELTFKDGKRSYTTMKAFEGVIGNLGRRMLQTESAWMREELS
KYQTPQPCETCHGARLRPEPLAVKIAGENISMSAQRSVADALRWFAGLDEKLNDTQRQIA
KAILKEINERLGFLNNVGLDYLNLNRTSGTLSGGESQRIRLASQIGSGLSGVLYVLDEPS
IGLHQRDNDRLLATLKRLRDLGNTVIVVEHDEDAIRHADYVVDMGPGAGLHGGEIVAQGT
LDEVLANKKSLTAAYLTGAKRIEVPGHRRKGNGFDLVLKGARANNLNNVTATIPLGTFTC
VTGLSGSGKSSLIIDTLYASAARVLNGARMVAGPHDSLSGLEHCDKVIDIDQSPIGRTPR
SNPATYTGAFTIIRDWFAGLPESQARGYKPGRFSFNVKGGRCETCTGDGLIKIEMHFLPD
VYVTCETCHGKRYNRETLEVKFKGHSIADVLDMTVEDAADFFKAVPAIRDKMAMLVRVGL
GYIKVGQQATTLSGGEAQRVKLAKELSRRSTGQTLYILDEPTTGLHFEDVRKLLEVLQAL
VDQGNSVVVIEHNLDVIKTADYILDLGPEGGVKGGEIVAAGTPEEVVKEKRSFTGQYLAP
LLAAVK
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
atgagtctcacccacatctccgtgcgcggcgcgcgcgagcataatctgaagggcatcgac
gtcgacctgccgcgcgatgcgctcgtcgtcatcaccggtctcagcggcagcggcaagtcg
agcctcgccttcgacaccatctatgccgaggggcagcggcgctatgtggagtcgctctcc
gcttacgcgcgccagttcctcgagatgatgcagaagcccgacgtcgagcatatcgacggg
ctgtcgccggcgatcagcatcgagcagaagacgacgagccgcaacccgcgctcgaccgtc
gcgacggtcactgagatctacgactatatgcgcctcttgtgggcgcgcgtcggcattcct
tactctcccgccaccggcgagccgatcagcgcgcagacggtcagccagatggtcgaccgc
gtgatggaattgcccgagggcacgcgcgcctatctgctcgctcccgtcgtgcgcgggcgc
aagggcgagtataagaaggaactcgcgcagtggcagaaggacggcttcacgcgcgtccgc
atcgacggcgaattttacgagatcggcgacgcgccgacgctcgacaagaaatacaagcat
gacatcgaggtcgtcgtcgaccgtatcgcggtgcgtgagggtctcgaaacacggctcgcc
gacagcttcgagaccgcgctgaagctcgccgaggggctcgcctatgtcgacctcgccgac
ggccccgtgccggggcgcgaggaggaggacaccggcggcgcgatgaagggcgcgggcatc
cctgcgaaccggctgatcttctccgaaaaattcgcctgccccgtgtcgggcttcacgatc
gccgagatcgaaccgcggctgttcagtttcaacgcgccgcagggcgcgtgccccgcgtgc
gacgggctcggcgagcggcaggagttcgaccccgacctcgtcgtccccaaccatgcgctg
agcctgaaaaagggcgcggtggtgccgtgggcgaaatcgaacccgccctcgccttactat
atgcaggtgctcgaaagcctcggcaaagcctatggtttcgacatgaccacgccgtggcag
gacctgcccggcgaggtgcagctgatcatcctctacggcaccggcggcaagcccgtcgaa
ctgaccttcaaggacggcaagcgcagctacacgacgatgaaggcattcgagggcgtgatc
ggcaacttgggccgccggatgctgcagaccgagagcgcgtggatgcgcgaggagctgtcg
aaataccagacgccgcagccgtgcgagacgtgccacggcgcgcggctgcgccccgaaccg
ctcgcggtcaagatcgcgggcgagaacatcagcatgtcggcgcagcgcagcgtcgccgac
gcgctccgctggttcgccggcctcgacgaaaagctcaacgacacgcagcgccagatcgcc
aaggcgatcctgaaagagatcaacgagcggctcggctttctcaacaatgtcggactcgac
tacctcaacctcaaccgcaccagcggcacactcagcggtggcgagagccagcgcattcgc
ctcgccagccagatcggcagcgggctgtcgggggtgctctacgtcctcgacgaaccgagc
atcgggctccaccagcgcgacaacgaccggctgctcgcgacgctgaagcggctccgcgac
ctcggcaacacggtgatcgtcgtcgagcatgacgaggatgcgatccgccacgccgactat
gtcgtcgacatgggccccggcgcggggctgcacggcggcgagatcgtcgcgcagggcacg
ctcgacgaggtgctcgcgaacaagaagagcctgaccgcggcgtacctcaccggtgcgaag
cggatcgaggtgccggggcaccggcgcaagggcaatggcttcgacctcgtgctcaagggc
gcgcgcgcgaacaacctcaacaatgtcaccgcgacgatcccgctcggcaccttcacctgc
gtcaccggcctgtcgggatcgggcaagtcgagcctgatcatcgatacgctctacgccagc
gcggcgcgcgtgctcaacggcgcgcggatggtcgcggggccgcacgacagcctgtcgggg
ctcgaacattgcgacaaggtcattgacatcgaccagtcgccgatcggccgcaccccgcgc
tcgaaccccgcgacctacaccggcgccttcacgatcatccgcgactggttcgcggggctg
cccgaaagccaggcgcgcgggtacaagcccgggcgcttcagcttcaacgtcaagggcggg
cgctgcgagacctgcaccggcgacgggctgatcaagatcgagatgcacttcctgcccgac
gtctatgtgacgtgcgagacgtgccacggcaaacgctacaaccgcgagacgctcgaggtg
aagttcaaggggcacagcatcgccgacgtgctcgacatgacggtcgaggacgccgcggac
ttcttcaaggcggtgcccgcgatccgcgacaagatggcgatgctcgtccgcgtggggctc
ggctatatcaaggtcgggcagcaggcgacgacgctgtcggggggcgaggcgcagcgggtg
aagctcgccaaggaactcagccgccgctcgaccggacagacgctctacatcctcgacgag
ccgaccaccggcctccatttcgaggatgtcaggaagctgctcgaagtgctccaggcgctc
gtcgaccagggcaacagcgtcgtggtgatcgagcataatctggatgtcatcaagaccgcc
gattacatcctcgacctcggccccgaaggcggggtcaagggcggcgagatcgtcgccgcg
gggacgcccgaagaggtggtcaaggaaaagcgcagcttcaccgggcaatatctggcaccg
ctgctggcggcagtgaaatag
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