Sphingopyxis sp. YF1: EAO27_09010
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Entry
EAO27_09010 CDS
T10727
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
spyf Sphingopyxis sp. YF1
Pathway
spyf03420
Nucleotide excision repair
spyf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spyf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EAO27_09010
03430 Mismatch repair
EAO27_09010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spyf03400
]
EAO27_09010
Enzymes [BR:
spyf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EAO27_09010
DNA repair and recombination proteins [BR:
spyf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EAO27_09010
MMR (mismatch excision repair)
Other MMR factors
EAO27_09010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_12
AAA_11
PCNA_N
Motif
Other DBs
NCBI-ProteinID:
UNU42824
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All DBs
Position
1888556..1890847
Genome browser
AA seq
763 aa
AA seq
DB search
MPDLTRPDPSDPPYLQGLNGPQRQAVLTTEGPVLMLAGAGTGKTAALTARLAHIMATRRA
WPSEILAVTFTNKAAREMRERIGRMIGDAVEGMPWLGTFHSICAKMLRRHAELVGLQSNF
TILDTDDQLRVLKQLIQAEGLDEKRWPARQLAGLIDKWKNRGLTPPDLDAADKEAYADGK
GQHFYALYQARLKTLNACDFGDLLLHMLVILKNHRDVLEQYQQRFKYILVDEYQDTNASQ
YLWLRLLAQARKNICCVGDDDQSIYSWRGAEVANILRFEKDFPGATVIRLEQNYRSTPQI
LAAASALIAQNSGRLGKTLWTDLEPGDKLRVVGVWDGPEEARRIGEELESLQRQHVSLDR
AAILVRAQFQTREFEDRFIAIGMPYRIVGGFRFYERAEIRDALAYLRLVQSPADDLAFER
IVNVPKRGLGDKAIQRIHQFARHEQAPLLHAASRIIETDELTPQARRQLANFVAQMRGWR
TKANELSHPELTQLILDESGYTAMLQADRSVEAAGRLENLSELVRAMEEYDSLEAFLEHV
SLVMDRDNDDQAETVTIMTIHAAKGLEFDHVFLAGWEDGVFPSQRSMDEGGTASLEEERR
LAYVAITRARRRATIYHAANRRIYGQWMSSIPSRFIGEIPPEHVESENSFGGGQSLWRAN
WSAQGDPFAHVAERNAARTMTRGPAWQRAVASSSTITRAPAPSERSPAASVGAKPRADLA
VGMRVFHEKFGYGEIADIDGNKLEVEFEQAGSKRVLDSFIKLA
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacctgacccgccccgacccgtcggacccgccctatctgcaaggattgaacggt
ccgcaacggcaggcggtgctcaccaccgaaggcccggtgctgatgctcgcgggtgccggc
accggcaagaccgcggcgctcaccgcgcggctcgcgcatatcatggcgacacgacgcgcg
tggccgtccgaaattctcgcggtcaccttcaccaacaaggcggcgcgcgaaatgcgcgaa
cgcatcgggcgcatgatcggcgacgcggtcgaggggatgccctggctcggcactttccac
agcatttgcgccaagatgctgcgccgccacgccgaactcgtcggactgcaaagcaatttc
accatcctcgacaccgacgaccagcttcgcgtcctgaagcagctgatccaggccgagggg
ctcgacgagaagcgctggcccgcgcgccagctcgccgggctgatcgacaagtggaagaac
cgcggcctcaccccgcccgatctcgatgccgccgacaaggaggcctacgccgacggcaag
ggccagcatttctacgccctctatcaggcccggctgaagacgctcaacgcctgcgatttc
ggtgacctgctgctgcacatgctggtgatcctcaaaaaccaccgcgacgtgctggaacaa
taccagcaacgcttcaaatatatcctcgtcgacgaatatcaggacaccaatgccagccag
tatctgtggctgcggctgctcgcgcaggcccgcaagaatatctgctgcgtcggcgacgac
gaccagtcgatctattcgtggcgcggcgccgaggtcgcgaacatcttgcgcttcgaaaag
gatttccccggcgcgaccgtgatccggctcgaacaaaattatcgctcgaccccgcagatc
ctcgcggcggcatcggcgctgatcgcccagaacagcggccgcctcggcaagacgctctgg
accgacctcgaacccggcgacaaattgcgcgtcgtcggcgtgtgggacggccccgaggaa
gcgcggcggatcggcgaagagctcgaaagcctccagcgccagcacgtctcgctcgaccgc
gccgcgatcctcgtccgcgcgcagttccagacgcgcgaattcgaagaccgtttcatcgcg
atcggcatgccgtaccgcatcgtcggcggcttccgcttctacgagcgcgccgagattcgc
gacgcgctcgcttatctgcgcctcgtccagtcgcccgccgacgacctcgcgttcgaacgc
atcgtcaacgtccccaagcgcgggctcggcgacaaggcgatccagcgcattcaccagttc
gcgcggcacgaacaggcgccgctcctccacgcggcatcgcggatcatcgaaaccgacgag
ctcaccccgcaggcacgtcgtcagctcgccaatttcgtcgcgcagatgcgcggctggcgc
acgaaggcgaacgagctctcgcaccccgagctgacccagctgattctcgatgaatcgggc
tatacagcgatgctccaggccgaccgcagcgtcgaggccgccggccgcctcgaaaacctg
tccgagctcgtccgcgcgatggaggaatatgactcgctcgaggctttcctcgagcatgtc
agcctcgtcatggaccgcgacaatgacgatcaggccgaaaccgtcaccatcatgacgatc
cacgccgccaaggggctggaattcgaccatgtcttcctcgctggctgggaagatggcgtc
ttcccgtcgcagcgctcgatggacgaaggcggcaccgccagcctcgaagaggaacgccgc
ctcgcctatgtcgcaatcacgcgggcacgccggcgcgcgaccatctaccatgccgcgaac
cgccgtatctacggccagtggatgagcagcatccccagccgcttcatcggcgaaatcccg
cccgaacatgtcgagagcgaaaacagcttcggcggcggacagagcctgtggcgcgccaac
tggtcggcgcaaggcgacccgttcgcccacgtcgccgagcgcaacgccgcgcgcacgatg
acgcgcggccccgcatggcaacgcgccgtcgccagttcgtcgacgatcacgcgtgcaccg
gctccctccgaacggagccctgccgcatcggtcggcgccaaaccgcgcgcggatctcgcg
gtcggcatgcgcgtcttccacgaaaagttcggctatggcgaaatcgctgacatcgacggc
aacaagctcgaggtcgaattcgagcaggccggcagcaagagggtgctcgacagcttcatc
aagctcgcctaa
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