Sphingopyxis sp. YF1: EAO27_11500
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Entry
EAO27_11500 CDS
T10727
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
spyf Sphingopyxis sp. YF1
Brite
KEGG Orthology (KO) [BR:
spyf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spyf03009
]
EAO27_11500 (rimO)
Enzymes [BR:
spyf01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
EAO27_11500 (rimO)
Ribosome biogenesis [BR:
spyf03009
]
Prokaryotic type
ribosomal protein modification factors
EAO27_11500 (rimO)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
Motif
Other DBs
NCBI-ProteinID:
UNU43267
LinkDB
All DBs
Position
2389346..2390731
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AA seq
461 aa
AA seq
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MTVKTLPAQPKVGMVSLGCPKALVDSERILTKLRADGYGLSPDYAGADVVLVNTCGFLDS
AKEESLEAIGEAMAENGRVIVTGCMGNEAEVIRARFPKVLAVTGAHQYEQVVDAVHDAAP
PTQGPFVDLVPEGGLKLTPRHYSYLKISEGCNHSCAFCIIPDLRGKLVSRRIDAVLREAE
KLVAAGTKELLVISQDTSAYGVDTRHDPREWKGREVRAHMTDLARELGQLRTSEGKAPWV
RLHYVYPYPHVDAVIPLMAEGLLTPYLDIPFQHASPSVLKRMKRPANEAKVLERLKSWRA
IAPDIAIRSSFVVGFPGETEADFQYLLDWLDEAQLDRVGAFRFEPVAGAQANALPDPVPE
EVKEERFQRIMAKTAAISAAKLEAKIGRTLPVIIDEVGEADPNDPDWDGSIGATGRSQAD
APEIDGHVYLRDVAATLRAGDIVDVAIEDADEHDLFGVVAG
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgacagtcaaaaccctccctgcccagccgaaggtcggcatggtgtcgctcggctgcccg
aaggcgctcgtcgacagcgaacggattctcaccaagctgcgcgccgacggctacggcctc
tcgcccgactatgccggcgccgacgtcgtgctcgtcaacacctgcggcttcctcgacagc
gccaaggaggaaagcctcgaggcgatcggcgaggcgatggccgaaaacggccgcgtcatc
gtcaccggctgcatgggcaacgaggccgaggtgatccgcgcgcgcttcccgaaggtgctc
gccgtcaccggcgcgcaccagtacgaacaggtcgtcgatgcggtgcatgacgccgcgccg
ccgacgcaggggcccttcgtcgatctggtacccgaaggcgggctcaagctgacgccgcgg
cactatagctatctcaagatttccgaaggctgcaaccacagctgcgccttctgcatcatc
cccgacctgcgcggaaagctggtcagccgccgtatcgacgcggtgctgcgcgaggccgaa
aagctcgtcgccgcggggacgaaggaactgctcgtcatcagccaagatacgtcggcttac
ggtgtcgacacgcgccacgatccgcgcgagtggaagggccgcgaagtccgcgctcatatg
accgacctcgcccgcgaactcggccagcttcggaccagcgaaggcaaggccccgtgggtg
cgcctccactatgtctacccctatccccacgtcgatgcggtgatcccgctgatggccgag
gggttgctgacgccctatctcgacatccccttccagcacgcgtcgcccagcgtcctcaag
cgcatgaagcgccccgcgaacgaagcgaaggtgctcgaaaggctcaaaagctggcgcgcg
atcgcccccgacatcgcgatccgatcgagcttcgtggtcggcttcccgggcgagaccgag
gcggatttccaatatctcctcgactggctcgacgaagcccagctcgaccgcgtcggcgcc
tttcgcttcgaacccgtcgcgggcgcgcaggcgaacgccctgcccgaccccgtgcccgaa
gaggtcaaagaagaacgtttccagcgcatcatggccaagaccgccgcgatcagcgccgcg
aagctcgaggccaagatcggccgcactttgcccgtgatcatcgacgaagtcggcgaagcc
gaccccaacgatcctgactgggacggcagcatcggcgccaccggccgcagccaggccgac
gcacccgagatcgacggccatgtctatctgcgcgacgtcgcggcgacgctcagggccggc
gacatcgtcgacgtcgcgatcgaggatgccgacgagcacgacctgttcggggtggtcgcg
ggctaa
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