Sphingopyxis sp. YF1: EAO27_15185
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Entry
EAO27_15185 CDS
T10727
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spyf Sphingopyxis sp. YF1
Pathway
spyf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spyf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EAO27_15185 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spyf03019
]
EAO27_15185 (pnp)
03016 Transfer RNA biogenesis [BR:
spyf03016
]
EAO27_15185 (pnp)
Enzymes [BR:
spyf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
EAO27_15185 (pnp)
Messenger RNA biogenesis [BR:
spyf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EAO27_15185 (pnp)
Transfer RNA biogenesis [BR:
spyf03016
]
Prokaryotic type
tRNA degradation factors
EAO27_15185 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
DUF3016
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
UNU43920
LinkDB
All DBs
Position
complement(3179619..3181916)
Genome browser
AA seq
765 aa
AA seq
DB search
MFDVKKVSIEWGGETLTLETGKVARQADGAVMATLGETVVLCAVTAAKSVKDGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINAIAQVLSY
DGHNEPDILAMVAASAALTISGVPFMGPIGAARVGYVDGEYILNPTDEQVAEGDLDLVVA
ATYDAVMMVESEANELSEEVMLGAVLFAHDACKEVVKAIVKLAEQAAKDPWEVAAGDDNA
AIKDKLKKLIGKDIAAAYKLTDKSARSNALNEARAKAKAQFTEDGLSPQDVMAGIKLTKK
LEAEIVRTAILKDGKRIDGRTTTQIRPIVAETHFLPRAHGSALFTRGETQTIATATLGTK
ESEQMVDGLNGLSYQNFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTKD
EFPYTIRLTSDITESNGSSSMASVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDYAILS
DILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITREIFEAALNQAKEGRAHILGEMNK
ALGETRSELSAHAPRIETMQIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGVIKISS
SDLDQIEAARKWIAGIVEEAEVGKIYDGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERV
EKVSDVLSEGQEVKVKVLEIDQRGKVRLSMRVVDQETGEELEDTRPAREPREPRGDRGPR
RDGGDRGRGGRDRGPRRDGGDRGPRRERSEDGPEDQGHVPDFLKD
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacgtgaaaaaagtatcgatcgagtggggcggtgaaacgctgaccctcgaaacg
ggcaaggttgcccgccaggccgacggcgccgtgatggcgacgctgggcgaaacggtcgtc
ctgtgcgccgtgaccgccgcgaagtcggtgaaggacgggcaggactttttcccgctcacc
gtccactatcaggaaaaatattcggccgccggtcgtatcccgggcggcttcttcaagcgc
gaacgcggcgcgaccgaaaaggaaacgctggtcagccgcctgatcgaccgtccgatccgc
ccgctgttccctgaaggtttctacaacgaaatcaacgccatcgctcaggtgctgagctat
gacggccacaacgagccggacatcctcgcgatggtcgcggcgtcggccgcgctcaccatc
tcgggcgtgcccttcatgggcccgatcggcgccgcgcgcgtcggttacgtcgacggcgaa
tatatcctcaatccgaccgacgaacaggttgccgaaggcgatctcgatctggtcgtcgcc
gcgacctacgacgcggtgatgatggtcgaatccgaagccaacgagctgtcggaagaggtc
atgctcggcgccgtcctgttcgcgcacgacgcgtgcaaggaagtcgtcaaggcgatcgtc
aagctcgccgaacaggctgccaaggacccgtgggaagtcgctgccggcgacgacaatgcc
gcgatcaaggacaagctcaagaagctgatcggcaaggacatcgccgccgcctacaagctg
accgacaagtcggcccgctcgaacgcgctcaacgaagcgcgcgcgaaggcgaaggcgcag
ttcaccgaagacggcctgtcgccgcaggacgtcatggccggcatcaagctgaccaagaag
ctcgaagccgaaatcgtccgcaccgccatcctcaaggacggcaagcgcatcgacggccgc
acgacgacgcagatccgtccgatcgtcgccgaaacgcacttcctgccccgcgcgcatggt
tcggcgctgttcacccgcggtgaaacgcagacgatcgccacggcgacgctcggcaccaag
gaaagcgaacagatggtcgatggcctgaacggcctgtcgtaccagaacttcatgctccac
tataacttcccgccctattcggtcggcgaagtcggccgcttcggcgcgccgggccgccgc
gaagtcggtcatggcaagctcgcctggcgcgcgctgcaccccgtgctgccgacgaaggac
gagttcccctacacgatccgcctgaccagcgacatcaccgagtcgaacggctcgtcgtcg
atggcgtcggtctgcggcggttcgctcgcgatgatggacgccggcgtgccgatcaagcgt
ccggtctcgggcatcgcgatgggcctgatcctggaaggcaaggattatgcaattctgtcg
gacatcctcggcgacgaggaccatctcggcgacatggacttcaaggtcgcgggcacgtcc
gaaggcatcaccacgatgcagatggacatcaagatcgcgggcatcacgcgcgagatcttc
gaagccgcgctcaaccaggccaaggaaggccgtgcgcacatcctcggcgagatgaacaag
gcgctcggcgaaacccgcagcgaattgtcggcgcacgcgccgcgcatcgagacgatgcag
atcgacaagtcgaagatccgcgacgtcatcggcaccggcggcaaggtgatccgcgagatc
gtcgcgaccaccggcgccaaggtcgacatcgacgacgagggcgtgatcaagatctcgtcg
agcgacctcgaccagatcgaagccgcgcgcaagtggatcgccggcatcgtcgaggaagcc
gaagtcggcaagatctatgacggcaaggtcgtcaacctcgtcgattttggtgcgttcgtg
aatttcatgggcggcaaggacggtctcgtccacgtcagcgaaatcaagaacgagcgcgtc
gagaaggtctcggacgtcctcagcgaaggccaggaagtcaaggtcaaggtgctcgagatc
gaccagcgcggcaaggtccgcctgtcgatgcgcgtcgtcgaccaggaaaccggcgaagag
ctcgaagatacccgcccggcgcgcgaaccccgcgaaccgcgcggcgatcgtggtccgcgc
cgtgacggcggcgaccgtggtcgcggcggccgtgaccgcggcccgcgccgcgacggcggt
gatcgcggcccgcgtcgcgagcgttcggaagacggtccggaagatcagggccatgtgccc
gacttcctgaaggactaa
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