Sphingopyxis sp. YF1: EAO27_15345
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Entry
EAO27_15345 CDS
T10727
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
spyf Sphingopyxis sp. YF1
Brite
KEGG Orthology (KO) [BR:
spyf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spyf03400
]
EAO27_15345 (addB)
Enzymes [BR:
spyf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EAO27_15345 (addB)
DNA repair and recombination proteins [BR:
spyf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
EAO27_15345 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
UNU43948
LinkDB
All DBs
Position
complement(3215951..3218971)
Genome browser
AA seq
1006 aa
AA seq
DB search
MSGVARPRFCAKAARVSSASHPAVFSIPVHRAFADALVAGLTARFADGALGLAEGMILLP
SNRARSAVQAAFVRAGGAGLLMPRLAVIGDADLDESVALALDPIDETGAMPPAIEPLRRR
LLLAELIERHTPAGEEAIRGAAAFQLAEGLARVIDQLHYEEVAPAALVDLDLGAFADHWR
ASLGRLRLLVDHWPDVLARTGHIDRAARRNRLLDRVADGWRVAPPARFTVAAGITTAAPA
VARLLRTVADMARGMVVLPGLDAVMTAEEWEALGPTKADPENRARPLETHPQYHLKLLLD
RMGVARAEVVEWDAGSAFDGPAARSPFVSLLFAPAEFTAQWQTAGDQSAATAGLSGAVFA
DDGQEAQGIALLMREAIETAGRTAALVTPDRGLAERVAAALARWGISVDDSAGQPLSKTP
PGALVLLLAELAARFDPIALVALLGHPLVRKGEGRTAWLDQVRRLDLLLREPGLTPGRAG
VSERIARCAADPRSRGHALAVQLQPWWDAVAAALDTALAPFASPSPPAVLLGALQAALEM
LAGDAVWSGPAGRALAGLFDQWALARGDGPSLVDPGDFPAMLDQLLAAESVRPPYGGHPR
LFIWGLLEARLQRADLMILGGLDEGRWPPAMQPDPWLAPGIRRLLGLPAPERQQGAAAHD
FAGALGAGEIVVTRARRSGGDPAVASRFWLRLAALAGDLPEPAPGGVAVTRLAAELDVPP
GDPQPVARPRPAPPAGERPRRISVTAVDRLARDPYAYYANQMLGLSALDPLSAAPDPRWR
GTRVHKLFEDWVRGGATADGFEAALAALAADPALDAIARAFWLPRIEPALRWAAAQVREA
GVRVPVDVEVRGEWTDGGLTLHGKADRIDRDADGGLAIVDYKSGGAPSTKAAYAKLDNQL
GLLGLIAREGGMVGIAAAPVASLEYWSLRPDRRAGGAGKISNTYGPRSDLKTAEAAIDHA
ADALSELAASYLFGEAPFVPGEAAGYGEYDQLMRRDEWFGRGEEGA
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggggtcgcgcgcccgcgattttgcgctaaggctgcgcgggtgtcatccgcctcg
catccagccgtcttctccatcccggtccaccgggccttcgccgatgcgctcgtcgccggg
ctgaccgcgcgctttgccgacggtgcgctggggctcgccgaaggcatgatcctgctgccg
agcaaccgcgcgcggagcgcggtgcaggcggcgttcgtgcgcgccggcggggcggggctg
ctgatgccccggctcgcggtgatcggcgacgccgacctcgacgagagcgtcgcgctcgcg
cttgacccgatcgacgagacgggggcgatgccccccgcgatcgaaccgctgcgccgccgc
ctgctgctcgccgaactgatcgaacgccatacccctgcgggcgaagaggcgatccgcggc
gcggcagcgttccagctcgccgaagggctcgcgcgggtgatcgaccagcttcattatgag
gaggtcgcgccggctgcgctcgtcgatctcgacctcggcgccttcgccgatcattggcgc
gcctcgctcgggcggcttcggctgctcgtcgatcactggccggacgtcctcgcccggacg
gggcacatcgaccgcgcggcgcggcgcaaccggctgctcgaccgggtggcggacggctgg
cgcgtcgcaccgcccgcgcgcttcaccgtcgccgcgggcatcaccaccgcggcgcccgcg
gtcgcgcggctgctgcgcaccgtcgccgacatggcgcgcggcatggtcgtgctgccgggg
ctcgatgcggtgatgaccgcggaagaatgggaggcgctcgggccgacgaaagccgatccc
gaaaaccgggcccggccgctcgaaacccatccgcaatatcatctcaagctgttgctcgac
cgcatgggcgttgcgcgcgctgaagtcgtcgagtgggacgcgggttcggcgttcgacggt
cccgccgcccgctcgcctttcgtctcgctgctcttcgcccccgccgaatttaccgcgcag
tggcagaccgcgggcgaccagtcggcggcgacggcgggtttgtcgggcgcggtgtttgcc
gacgacgggcaggaagcgcagggcatcgcgctgctgatgcgcgaggcgatcgagacagcc
gggcggacggcggcgctggtcacccccgatcgcggtctggccgaacgcgtcgcggcggcg
ctggcgcgctggggtatctcggtcgacgacagcgcgggccagcccctgtcgaagacaccg
ccgggggcccttgtgctgctgctcgccgagctggcggcgcgcttcgatccgatcgcgctg
gtggccttgctcggccatccgctggtccgcaagggcgaggggcgcacggcgtggctcgat
caggtccggcggctcgacctgttgctgcgcgagccggggctgacaccgggacgcgccggg
gtgagcgaacggatcgcccggtgcgccgccgacccccggtcgcgcgggcacgcgctcgcg
gtacagcttcaaccctggtgggatgcggtggcggccgcgctcgatacggcgctcgcgccc
tttgcttcgccttcgccgcccgcggtcctgctcggcgcattgcaggcggcgctcgagatg
ctggcgggcgacgcggtgtggagcggaccggcaggacgcgcgctggcgggattgttcgat
caatgggcgctggcgcgcggcgatgggccgtcgctggtcgatcccggtgatttccccgcg
atgctggaccagctcctcgccgccgaaagcgtgcgaccgccttacgggggacacccgcgt
ctgtttatctggggattgctcgaagcgcgattgcagcgcgccgacctgatgatccttggc
gggctcgacgaagggcgctggcccccggcgatgcagcccgatccgtggctcgcgccgggc
atccgccgcctgcttggcctgcccgcgcccgaacgccagcagggcgccgcggcgcacgac
tttgcgggtgcgcttggcgcgggcgagatcgtcgtgacgcgcgcgcggcgaagcggtggc
gaccccgcggtggcgtcgcgcttctggctgcggctggcggcgctcgcgggcgatctgccc
gagcccgcgccagggggcgtagcggtcacgcggctcgccgcggagctcgacgtcccgccg
ggcgacccgcagcccgtggcccggccgcgtcccgcgccccccgccggcgagcgcccgcgc
cggatcagcgtcacggcggtcgaccggctcgcgcgcgatccctatgcctattatgccaac
cagatgctcggcctgtcggcgctcgacccgctgagcgccgcgcccgacccccgctggcgc
ggcacgcgtgtgcacaaattgttcgaggattgggtgcgtggcggcgcgacggcggacggc
ttcgaggctgcgcttgcggcgctggcggccgaccccgcgctcgacgcgatcgcgcgcgct
ttctggctgccgcggatcgaaccggcgctgcgctgggcggcggcgcaggtccgcgaagcc
ggcgtacgcgtgccggtcgatgtcgaggtacgcggcgaatggaccgacggcggactgacg
ctgcacggcaaagccgaccggatcgaccgcgacgccgatggcggtctcgcgatcgttgat
tacaagtcgggcggcgcgccgagcacgaaagcggcttatgcgaagctcgacaaccaattg
gggctgctcggcctgatcgcgcgcgagggtggcatggtgggcatcgccgcggcgccggtt
gcgagccttgaatattggagcctgcgtcccgatcgccgcgcgggcggggcggggaagatc
agcaacacttatgggcctcgcagcgacctcaagaccgccgaggcggcgatcgaccatgcc
gctgacgcgctgtcggaactggcggcttcctacctgttcggcgaagcgcccttcgtgccg
ggcgaggcggcgggctatggggagtatgaccagctgatgcgccgcgacgaatggttcggg
cgcggggaggagggcgcatga
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