Sphingopyxis sp. YF1: EAO27_20505
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Entry
EAO27_20505 CDS
T10727
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spyf Sphingopyxis sp. YF1
Pathway
spyf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spyf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EAO27_20505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spyf03019
]
EAO27_20505
03009 Ribosome biogenesis [BR:
spyf03009
]
EAO27_20505
Enzymes [BR:
spyf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EAO27_20505
Messenger RNA biogenesis [BR:
spyf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EAO27_20505
Ribosome biogenesis [BR:
spyf03009
]
Prokaryotic type
rRNA processing factors
EAO27_20505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
DUF5859
Motif
Other DBs
NCBI-ProteinID:
UNU45275
LinkDB
All DBs
Position
complement(4347391..4350069)
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AA seq
892 aa
AA seq
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MLIDARHREETRVAVTKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVEYGGN
RHGFLAFSEIHPDYYQIPKEDREALLREEAEHAAEAAMRAEEDLDELEGDIAEVERPGED
ENGDVPAPETVGEDAEGDEEHGDDENGDAAGDGDEGSEEGRDERGDRKGRGRGRGRKGGR
GRGRRDDDDGENRMSLRRRYKIQDVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRYCV
LMPNTMHGGGISRKISNGADRRKLKAMIDELNLPPTMGCIVRTAGMSRTKVEIKRDFDYL
ARVWDEIRETTLQSSAPALVHSDSDLVKRAIRDIYHKDIEEVLVEGDEGYKAAKQFMKLL
MPSHARRVKQYADPVSLYQRYGVEDQLAGMLNPVVQLKSGGYLVINPTEALVSIDINSGR
STREHNIEQTALSTNLEAAHEIARQLRLRDMAGLIVIDFIDMDHGSNVRKVERAMKEALK
NDRARIQIGRISGFGLMEMSRQRLRTGVLEASTRPCPHCEGTGLVRTASSAGLGALRLIE
EEAARGKGSKITLRASQEATFYLLNEKRRELREIEELYGVSVEILPDGETEGARMAIEVG
GPPPVQRRSFAPIVEIEEEEEDVFDEEDDVEEEAAEERPRQRERERSDDEADGDGRKRRR
RRRRGRRGRRDDEGGEIVDGDNDADSDSDGEAVDAVETAEAETAADAPETETAEAETKPK
RRRGGRGRKAKDEAANAEATEVAEVAPAGDAAAEVAAETADVAAEATAEPVAEDAPAEEK
PKRKRAPRKTKAALAAEAAAAAETAEAPAEAAAEDAPANEAVAEPAAEDAPVEEKPKRKR
APRKTKAAADEAPATEAPAAEAEPVGAGAEAETDDTPDGEPRRGWWQRTFGN
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgttgatcgacgcgcggcatcgggaagaaacccgtgtcgccgtcaccaagggaaaccgc
atcgaggagtttgatttcgagtccgccgagcacaagcagctcaagggcaatatctatctg
gccaaggtaacccgcgtcgaaccgtcgctgcaggcggcgttcgtcgaatatggcggcaat
cgccacggattcctggcctttagcgaaatccaccccgactattaccagattccgaaggaa
gaccgcgaagcgctgctgcgcgaggaagccgagcacgccgccgaggccgcgatgcgcgcc
gaggaggatctcgacgagctcgaaggcgacatcgccgaggtcgaacgccccggcgaggac
gaaaatggcgacgtcccggcccccgaaaccgtcggcgaagacgccgagggtgacgaggag
catggcgacgacgaaaacggcgacgctgcgggcgacggcgacgaaggctccgaagagggc
cgcgacgagcgcggcgaccgcaagggccgcggacgcgggcgtggtcgcaagggcggccgc
ggacgcgggcgccgcgacgacgacgatggcgaaaatcgcatgtcgctgcgtcgccgctac
aagatccaggacgtcatccgtcgccgccaggtgatgctggtgcaggtggtcaaggaagaa
cgcggcaacaagggcgccgcgctgaccacctatctgagcctcgccggccgctattgcgtg
ctgatgccgaacacgatgcacggcggcgggatcagccggaagatttcgaacggtgccgat
cgccgcaagctgaaggcgatgatcgacgagctcaacctgccgccgacgatgggctgcatc
gtccgcaccgccgggatgagccgcaccaaggtcgagatcaagcgcgacttcgactatctt
gcccgcgtctgggacgaaattcgcgagaccacgctgcagtcgagcgccccggcgctcgtc
cattcggacagcgacctggtcaagcgcgcgatccgcgacatctatcacaaggatatcgag
gaagttctcgtcgagggcgacgagggctacaaggccgcgaagcagttcatgaaattgctg
atgccgagccatgcgcggcgcgtgaagcaatatgccgatccggtctcgctctatcagcga
tacggggtcgaagaccagctcgcggggatgctcaatcccgtcgtccagctgaaatcgggc
ggttatctggtgatcaacccgaccgaggctttggtgtcgatcgacatcaactcgggccgg
tcgacgcgcgagcataatatcgaacagaccgcgctcagcaccaacctcgaggcggcgcac
gagattgcgcgccagctgcgcctgcgcgacatggccgggctgatcgtgatcgacttcatc
gacatggatcacgggtcgaacgtccgcaaggtcgagcgcgcgatgaaggaagcgctgaag
aacgaccgcgcgcgcatccagatcggccgcatctcgggctttggcctgatggaaatgagc
cgccagcgcctgcgcaccggcgtgctcgaagcgtcgacgcgcccgtgcccgcattgcgaa
ggcaccggactcgtccgcaccgcttcgtcggcgggtctcggcgcgctgcgcctgatcgag
gaagaagccgctcgcggcaagggcagcaagatcacgctgcgcgcgagccaggaagcgacc
ttctacctgctcaacgaaaagcgccgcgaactgcgcgaaatcgaggagctttacggcgtc
agcgtcgaaatcctgcccgacggcgagaccgagggcgcgcgcatggcgatcgaggtcggc
ggcccgccgccggtccagcgccgcagcttcgcgccgatcgtcgagatcgaggaagaggaa
gaagacgtcttcgacgaggaagatgacgtcgaagaggaggccgccgaagagcgcccccgt
cagcgcgaacgcgaacggagcgacgacgaggccgacggcgacggccgcaagcgccgccgc
cgccgccgccgcggccgccgcggccgccgcgacgacgagggtggcgagatcgtcgatggc
gataacgacgccgactcggatagcgatggcgaagccgtcgacgcggtggaaacggccgaa
gccgaaaccgcagccgatgcccccgaaaccgaaaccgccgaagcggaaaccaagcccaag
cgccgccgcggcggacgcgggcgcaaggcgaaggatgaggcggccaacgccgaagccacc
gaggtcgccgaggtcgcccctgccggggatgcagccgcggaggtcgccgccgaaaccgcg
gacgtcgccgccgaagccaccgccgaaccggtagccgaagacgcgcccgccgaagaaaag
ccgaagcgcaagcgcgcgccgcgcaagaccaaggcggcgcttgccgccgaggcggccgcg
gcggccgaaaccgccgaagcgccggctgaagccgccgccgaggacgctcctgcgaacgaa
gccgtcgccgagccggcagccgaagacgcccccgtcgaggaaaagccgaagcgcaagcgc
gcgccgcgcaagaccaaggcggcggccgacgaagctcccgcgaccgaagcgccggcagcg
gaagccgaacccgtcggcgccggcgccgaagcggaaaccgatgacacccccgacggcgaa
ccccgccgcggctggtggcagcgcacgttcggcaactga
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