Sphingobium sp. YG1: YGS_C1P0956
Help
Entry
YGS_C1P0956 CDS
T05858
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spyg
Sphingobium sp. YG1
Pathway
spyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YGS_C1P0956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spyg03019
]
YGS_C1P0956
Enzymes [BR:
spyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
YGS_C1P0956
Messenger RNA biogenesis [BR:
spyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YGS_C1P0956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
BBC99700
LinkDB
All DBs
Position
1:1026500..1027849
Genome browser
AA seq
449 aa
AA seq
DB search
MKALASKNYVTPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSLDYFARNAKPTPI
KGCRMLVLAPTRELAAQIAQSFRDYGRFLKLSVETVFGGVPIGKQIRALSAGVDIVVATP
GRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRVAKMLPQDRQNLFFSATMPKE
IEALAAQFLNDPVKVSVAPQSTTAERVRQQATFVNQAEKQALLHIVLKNEDIDRALIFTR
TKHGADRVVRFLEGAGIDAFAIHGNKSQGQRTTALQAFRQGKVKLLVATDIAARGIDVSG
VSHVINFEIPNVPEQYVHRIGRTARAGAEGVAISFVADDERPYLKAIERATRVKLEIEPL
PENFMEAVRNLPKPAAPKKGPSQTPQQQARRADGQRRYQDGQKQQRGAPDRAHRTDAEGG
EKKPFRGRCRGRGGVGTHKGAVQRTGAPR
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcgctcgcctccaaaaattacgtcacgccgaccccgatccagcaaaaggcgatc
cccgtcctgctggaaggccgcgatctgtgcggcatcgcccagaccggcaccggcaagacg
gcggccttcgcgctgcccagcctcgactatttcgcccgcaatgcgaaaccgaccccgatc
aagggctgtcgcatgctggtgctggccccgacccgcgaactcgccgcgcagatcgcgcag
agcttccgcgactatggccgcttcctgaaactgtcggtcgaaaccgtgttcggcggcgtg
ccgatcggcaagcagatccgcgccctgtcggccggtgtcgatatcgtcgtcgccacgccg
ggccgtctgctcgacctgatcgaccagcgcgccttcaccatcaaggatacggaaatcttc
gtcctcgacgaagcggaccagatgatggacatgggcttcatccatccgctcaagcgcgtc
gccaagatgttgccgcaggaccgccagaaccttttcttctcggccaccatgcccaaggaa
atcgaggcgctcgccgcccagttcctgaacgatccggtcaaggtcagcgtcgccccgcaa
tccaccacggccgaacgcgtgcgccagcaggccaccttcgtcaatcaggcggaaaagcag
gcgctgctccacatcgtcctcaagaatgaggatatcgaccgcgcgctcatcttcacccgc
accaagcatggtgccgatcgcgtcgtgcgcttcctggaaggcgcgggcatcgacgctttc
gccatccatggcaacaagagccagggccagcgcaccaccgcgctccaggccttccgtcag
ggcaaggtgaagctgctggtcgcgaccgatatcgctgcgcgcggcatcgacgtgtcgggt
gtcagccacgtcatcaacttcgaaatccccaacgtgcccgaacaatatgtccaccgcatc
ggccgcaccgcgcgcgccggggcggagggcgtcgcgatcagcttcgtggcggatgatgaa
cggccttacctgaaggcgatcgagcgcgcgacgcgcgtgaagctggaaatcgagccgctg
cctgagaatttcatggaagcggtccgcaacctgcccaagccggctgcgcccaagaaggga
ccgagccagacgccgcagcagcaagcccgtcgcgccgacggccagcgtcgttatcaggat
ggtcagaagcagcagcgcggcgcccccgaccgtgcgcatcgcaccgatgccgagggcggc
gagaagaagcccttccgcggccgctgccgtggtcgcggcggtgtcggcacgcacaagggc
gcggtccagcgcacgggcgcaccgcgctga
DBGET
integrated database retrieval system
